LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi413g00011	ATGACAGAGAGAAACCCAATAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAGCAATGGTCTTTTGAACTATCTGACTACATGTGTTTCGATGACATTGATTGGCAACAAGTTGATCCTACCACTTATAATCAGTCTTTTGTTTATCAAGCCAACGGAGTAGCCGGTGGTAGCAGCAACGTTGAGGGGTCTTCTAGTTATACCAGGGATACAAATACTAGAATGAGTGGAACAGCCCTAACCCAAGGTACATATTGGAAGAGTGAAGTGAAGGAGAGAGTTGCATTCAAAACAATGACAGAGATTGAGATACTTGACGATGGTTACAGATGGAGGAAGTATGGAAAGAAAATGGTCAAGAACAGCCCTAATCCAAGGAATTATTATAGGTGTTCAGTGGAGGGATGTCCGGTGAAAAAGAGAGTTGAGAAAGATAAGGATGATTCGAGATATGTGATCACAACCTATGAAGGCATGCACACGCACCCAACTTCTTCATAG	510	0.4157	MTERNPIAANSSSPDSDFSNQQWSFELSDYMCFDDIDWQQVDPTTYNQSFVYQANGVAGGSSNVEGSSSYTRDTNTRMSGTALTQGTYWKSEVKERVAFKTMTEIEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVEKDKDDSRYVITTYEGMHTHPTSS	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi413g00011	169	SMART	WRKY_cls	108	167	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00011	169	Gene3D	WRKY domain	95	161	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00011	169	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vivi413g00011	169	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	73	166	IPR044810	GO:0003700
	Vivi413g00011	169	FunFam	WRKY transcription factor 57	94	168	-	-
	Vivi413g00011	169	SUPERFAMILY	WRKY DNA-binding domain	100	167	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00011	169	ProSiteProfiles	WRKY domain profile.	103	168	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00011	169	Pfam	WRKY DNA -binding domain	109	166	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi413g00011	47	165	WRKY Transcription Factor Family	AT5G26170	57.031	2.34e-42	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi413g00011		WRKY	7.8e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi413g00011	-		-	gmx:100796836	188.348