Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi411g00022 ATGACGACGGCGCCTCCACCAACGCCGCCGCCACTCGAACTCAAAACCTACTGGTGCCACGAATGCGACATGAGCGTCTCTCTCACTTCCTCCCCCTCTCCCTCTCCTCTCCTCTGCCCTCAATGTCACACCCATTTCCTCGAACTCATGGACTCCCCTTTCTCCCAAAACGACGCCGATTCGTTTCTCCCTTCTTCCTCCCTCTTCGACGTCGTTTTCCAAGACGCGCTTTTACTACTCGCACCTCCTCCCTCTAAAACCCGCACAGAAACAATCATTCCTATAATAACCGTTACGCAAACTCTTCTTTCCTTACTCGATCCAAACGGCGTCGTTTTATGCGCGGTTTGTAAGGATTCTATTTCCGTTGACGAAGAAGCGAAACAGCTTCCTTGTGATCATCTTTACCACTCCGATTGTATTACTCCATGGCTTCGTCTTCGATCTTCTTGTCCTCTCTGTCGATTCAGAATCTCAGAGGATGAAGATGAAGATGAAAATGATGAGGAAGATGTTAATGGTGCTGATATGATGAGGGAGATGATGGCGCGGATGTCGGAGTTGTCGGAGGATGATTTCTATGGCCTGAGAATGACTCTCAATTACATTGCTTCCCGGCATGAACTTCTTCATTCTAATGCTTCTGGCGGCGGTGATAATCATGATGCGAGTAGTGAAGTTGGTGGAGATGTAGATGGAGGATCTTGA 708 0.4859 MTTAPPPTPPPLELKTYWCHECDMSVSLTSSPSPSPLLCPQCHTHFLELMDSPFSQNDADSFLPSSSLFDVVFQDALLLLAPPPSKTRTETIIPIITVTQTLLSLLDPNGVVLCAVCKDSISVDEEAKQLPCDHLYHSDCITPWLRLRSSCPLCRFRISEDEDEDENDEEDVNGADMMREMMARMSELSEDDFYGLRMTLNYIASRHELLHSNASGGGDNHDASSEVGGDVDGGS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi411g00022 235 Pfam zinc-ribbon 16 50 IPR039525 GO:0061630
Vivi411g00022 235 Pfam Ring finger domain 114 155 IPR001841 -
Vivi411g00022 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 173 IPR013083 -
Vivi411g00022 235 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Vivi411g00022 235 MobiDBLite consensus disorder prediction 213 235 - -
Vivi411g00022 235 SUPERFAMILY RING/U-box 111 161 - -
Vivi411g00022 235 SMART ring_2 114 154 IPR001841 -
Vivi411g00022 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 157 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi411g00022 13 75 C3H Transcription Factor Family AT3G60080 49.254 2.39e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi411g00022 K11982 - gmx:100782164 242.276