Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi40g00028 ATGTGGTGTACACAATCTCTGTCCCCTATTCATTCCTCTTCCATTCATCATTTTAACTATATGAAAAGAGAGAAATGTTCTTTACAAAATCTGCATAAAGAACATACATTTTGGTTATTCACCATATTGTGTCACATGGCAGCATCTCCATCTCCTCGATCGCCTCTTGCATCGCAAACTATTAACGACGGAAATATTAGTACTGCGAAAGAAACGACAACTTCTTCATCCATAAGCAAAATCAGTCCACTGATTTTGTTAGTTATAATAGTATTAGCAATTATCTTCTTTCTCTATGGACTTGTCCAGTTAATTTTATGGTTACTGATGAAAAGGCCATCCTCTTCATCTCATTATAATTCCAATAGATTCCAAGAATCGGCCCGAACCCGATCTCTTCAGAGGCAACTACAACACTTATTCCACTTGCATGATTCAGGTCTTGACCAAGCTTTCATAAACACTCTTCCTGTTTTCAACTACCAAGATTTATTGGGTTTGAAGGAGCCTTTTGATTGTGCTGTGTGTCTCTGTGAGTTTTCTGAACAAGATAAGCTGAGATTGGTTCCTATATGCAGCCATGCATTTCATATGAATTGTCTTGACACATGGCTTCTCTCAAATTCTACTTGTCCTCTTTGTAGAGCAAATATCTCCAACAATAGTTTCCCTTTGGAGAACGTTAATGTTGTCGAGGATTCTTTGGTTCTGTCACATAGGTTCAATGTGAATGGTGATAAAGAGAATATTATTGAGGAACAAGTAGGTGACAAAAGGGTGTTTTCTGTGAAGCTTGGAAAATTCAGAAGCAATGGATTGGAGGATGGTAGTAGTTGTAGTTTGGATGAAAGGAGATGTTATTCAATGGGTTCATATCAGTATGTGTTTTGTGATTCATATTTGCAAGTGGTTTTGTCTCAATCTTGTTGTGAAGAAGATGAAAATGGAAATGTGGAGGGGAAGAGGATAGGGAATAGAATCAAAGGTGAGAGTTTTTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAGCAACATTCCTAGTTCTAATACTGTTTTTCCTTGA 1065 0.3718 MWCTQSLSPIHSSSIHHFNYMKREKCSLQNLHKEHTFWLFTILCHMAASPSPRSPLASQTINDGNISTAKETTTSSSISKISPLILLVIIVLAIIFFLYGLVQLILWLLMKRPSSSSHYNSNRFQESARTRSLQRQLQHLFHLHDSGLDQAFINTLPVFNYQDLLGLKEPFDCAVCLCEFSEQDKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRANISNNSFPLENVNVVEDSLVLSHRFNVNGDKENIIEEQVGDKRVFSVKLGKFRSNGLEDGSSCSLDERRCYSMGSYQYVFCDSYLQVVLSQSCCEEDENGNVEGKRIGNRIKGESFSVSKIWLWSKKSNIPSSNTVFP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi40g00028 354 Pfam Ring finger domain 172 215 IPR001841 -
Vivi40g00028 354 FunFam E3 ubiquitin-protein ligase ATL6 135 221 - -
Vivi40g00028 354 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Vivi40g00028 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 77 338 - -
Vivi40g00028 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 223 IPR013083 -
Vivi40g00028 354 SMART ring_2 173 214 IPR001841 -
Vivi40g00028 354 SUPERFAMILY RING/U-box 152 220 - -
Vivi40g00028 354 CDD RING-H2_EL5-like 172 215 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi40g00028 72 343 C3H Transcription Factor Family AT2G18650 39.521 4.06e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi40g00028 - - vvo:131622396 672.159