LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi40g00022	ATGGCAGCTCGCTCACTTTCCCGTTTGCTCTCTCGCTCTCTATCTTCTTCTTCTGGAGCTGCTGGTTCTCTGCTTCGCTCACCACTAGGAAGAAAATCTGAAGGGTGGAGTAACACAAACAGATTTAGCACTGCTGCAGCTGTTGAGGAATTGATTACTCCTCAAGTTCCAATCAATCATACACAGCTTCTCATAAATGGAAAATTTGTAGATGCTGCATCAGGGAAAACATTTCCAACTTATGACCCGCGCACAGGAGAAGTGATTGCTCAGGTAGCTGAAGGCGATGCTGAAGATATCAATCGTGCAGTAGCAGCAGCTCGTGAGGCCTTTGATAATGGACCTTGGCCTAAAATGACTGCTTATGAAAGAAGTCGTATATTGTTGCGCTTTGCTGATTTGGTTGAGAAGCATAATGATGAGATTGCAGCCTTGGAGACATGGAACAATGGAAAGCTTTATGATCAGGCTGCCAAGACTGAAGTACCTATGTTTGTGCGTTTATTTCGCTATTATGCTGGGTGGGCAGATAAAATTCATGGGTTGACACTCCCAGCGGATGGAGATTATCATGTCCAGACATTGCATGAACCAATTGGTGTAGTAGGACAAATTATACCTTGGAATTTTCCTCTTCTTATGTTTGCTTGGAAAGTTGGACCAGCACTAGCATGTGGTAATACCATTGTCCTCAAAACTTCTGAGCAAACACCACTAACGGCTCTCATCGTGGTGAAACTGCTTCATGAGGCTGGTCTTCCCCCAGGTGTTCTCAATATAGTTTCTGGCTATGGTCCAATTGCTGGCGCACCTCTTGCAAGTCATATGGACGTGGATAAGTTAGCATTCACCGGATCAACGGATACTGGAAAAATTGTGCATCAACTGGCTGCAAAAAGCAATCTTAAGCCCGTGACATTGGAACTTGGAGGAAAATCACCTTTCATTATTTGTGAAGATGCTGATGTTGACAAGGCTGTTGAAATTGCACACTTTGCTCTATTTTTTAATCAGGGGCAATGTTGTTGTGCTGGATCCCGTACCTTCGTACATGAGAGTATCTATGATGAGTTCTTGGAGAAAGCGAAGGCGCGGGCTTTGAGGCGTGTTGTTGGTGATCCATTTAAGAAAGGTGTAGAACAAGGTCCTCAGATTGATTCGAAACAATTTGAGAAAGTACTTAGGTACATAAAGTCTGGAATTGATAGCAATGCTACTCTTGAATGTGGAGGAGGGAGATTGGGTTCAAAAGGCTTCTTTGTCCAACCAACAGTATTCTCAAATGTTCAGGATGATATGTTGATAGCAACAGATGAAATCTTTGGACCAGTTCAGTCCATCTTGAAGTTCAAGGACATTGATGAAGTGATACGACGGGCAAATGCGACGCGTTATGGTTTAGCGGCAGGTGTTTTCACGAAAAATTTGAGCACGGCCAACACCCTGATGCGGGCACTGAGAGCTGGAACAGTGTGGATTAATTGCTTTGATGTTTTTGATGCTGCAATTCCTTTTGGTGGTTACAAGATGAGTGGGAATGGTAGGGAGAAAGGAATCTATAGTCTTAATAACTATCTGCAGGTAAAAGCTGTGGTGTCTCCAGTAAAGAATCCTGCCTGGTTGTAG	1626	0.4367	MAARSLSRLLSRSLSSSSGAAGSLLRSPLGRKSEGWSNTNRFSTAAAVEELITPQVPINHTQLLINGKFVDAASGKTFPTYDPRTGEVIAQVAEGDAEDINRAVAAAREAFDNGPWPKMTAYERSRILLRFADLVEKHNDEIAALETWNNGKLYDQAAKTEVPMFVRLFRYYAGWADKIHGLTLPADGDYHVQTLHEPIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKTSEQTPLTALIVVKLLHEAGLPPGVLNIVSGYGPIAGAPLASHMDVDKLAFTGSTDTGKIVHQLAAKSNLKPVTLELGGKSPFIICEDADVDKAVEIAHFALFFNQGQCCCAGSRTFVHESIYDEFLEKAKARALRRVVGDPFKKGVEQGPQIDSKQFEKVLRYIKSGIDSNATLECGGGRLGSKGFFVQPTVFSNVQDDMLIATDEIFGPVQSILKFKDIDEVIRRANATRYGLAAGVFTKNLSTANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYLQVKAVVSPVKNPAWL	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi40g00022	541	FunFam	Mitochondrial aldehyde dehydrogenase 2	313	502	-	-
	Vivi40g00022	541	Pfam	Aldehyde dehydrogenase family	69	531	IPR015590	GO:0016491
	Vivi40g00022	541	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	307	314	IPR029510	GO:0016491
	Vivi40g00022	541	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	46	531	-	-
	Vivi40g00022	541	CDD	ALDH_F2BC	58	532	-	-
	Vivi40g00022	541	MobiDBLite	consensus disorder prediction	17	37	-	-
	Vivi40g00022	541	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	335	346	IPR016160	GO:0016491
	Vivi40g00022	541	SUPERFAMILY	ALDH-like	55	534	IPR016161	GO:0016491
	Vivi40g00022	541	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	313	502	IPR016163	GO:0016620
	Vivi40g00022	541	FunFam	ALD5p Mitochondrial aldehyde dehydrogenase	65	333	-	-
	Vivi40g00022	541	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	75	531	IPR016162	GO:0016491
	Vivi40g00022	541	FunFam	Aldehyde dehydrogenase, putative	503	529	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi40g00022	1	541	Aldehyde Dehydrogenase Gene Family	AT3G48000	78.413	0.0	895

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi40g00022	K00128		-	gmx:100811501	925.235