Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi40g00019 ATGAATACTCATCTTCCTAATCATAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCATCCTTGCGAAGGAATATCCACCGCAACACTCGTCGCTTCTCTAATCACTCTCTCGCAAACCATATGCAATTTCCAACCTCAAATATTTCCAACACAAAAACGAAACGCAAGAGAAACCATACGTCAAATTTCCATCATTTCAATATTCCTCCACGAAATTCAAGACAATTATTCCTTAATCCCTAACTCAATTATCATCTCTTTCTCAGAGCTTCACTTCACTTTACAAAAGATTCATTTCTTAATGCAAGATTGTACTCTTGAAGGTGCTAACCTTTTATTGCTCTCGAAATCGAAACAAGTGGCGGAACACTTTTGCTCTCTTATTCGCGCCGTCGCAACATCACTAGACGTTTTGCCTTTACACAGAATCGAAATTTGCGACGAAGTGAAGGAGTTAGTTGAGATGGTAGCAAAGCAAGCGAGGAAAGCTAAATTTGAAGTGAACCCCAGTGACGAGATTGCGACGAAAAAACTCTATTCAGTTCTTCATCAATTCGAGAGAGGAACAGAGCCAAAACTTCATATCATGCAGGAGATTCTCGATTACTTAAAAATCAAAAACTGGAACGATTGCAACAAAGAAATCAAGTTCATAGAAAACGAGATAAGCTTATTAGAGTATCGTGATTGCAACGAACGTGAACTTCCATTGTTGAGTAGCTTGGTTGGATTTTTAAGCTACTGTAGGGTAGTGATATTCGAATTCGAATCACTGGATCAAAATTCAGATCAATCCGAAGCTCGTATCAGCACCGAGATAATATCTATAACATGTCTGAATCCAGACGATTTCCGATGTCCAATTTCACTCGAATTGATGACAGATCCAGTAACAATTTCAACCGGACAAACCTACGACCGTGCCTCAATTTATAAATGGCTTAAAGCAGGAAACAAAACATGTCCCAAAACAGGAGAAAATCTTAACAGCACAGAGTTAGTCCCAAACACAGCGCTAAAGAAGCTTATCCAACAATTTTGCACCGACAACGGAGTTTCATTTTCCAAATCATGTAACCGCAACCGAGATATAACCAAAACAATTTCACCAGGTAGTTCTGCAGCAGCACATGCTATACAGTTTCTGTCATGGTTTCTAACACGAAGGCTCGTGTTCGGAACAGAGAAACAGAAGAACAAAGCAGCTTACGAGATTCGTTTGTTAACTAGGTCGAGTATTTTCAACAGAGCGTGTTTGATTGAAGTTGGAACGGTGCCGCCATTGTTGGAGCTTTTAGCCACGGAAGATAAAACGACACAAGAGAATGCTATCTCTGCTTTGATGAAGCTTTCAAAGCATAGTAACGGGCCTGAAAATATAATGGGCCATAACGGTTTAAAGCCCATTATATCGGTACTTAAAAATGGGCTTAGTCTTGAGGCCCAACAAATCGCAGCAGCTATAATCTTCTATCTTTGTTCAGTGAAAGAATACAGAAAATCAATAGGTGAAAATCAAGACGCGATTCCGTGTTTAGTTGAGTTAGTTAAACAAGGAACAACATGCGGGAAAAAGAACGCTGTTGTTGCGATTTTCGGACTTCTTTTGCTACCAAGAAATCACCAACGCGTGATTGAAGCCGGTGCTGTTCACGCGCTTGTTTCTATTTTACATCCTTCGTATAACTATAAAGAGGAACTTGTTACTGAAGCTTTGGCTGTTATTGCGGCACTAGCTGAGAATTTCGATGGAGCGAACGCTGTGTTGGAAGCTTCGGCGTTAACGTTAATTACCGGGATGTTGCGATCTGCTACTTCGCGTGCTGGGAAGGAACACTGTGCTTCGATTTTGTTGTCGCTTTGTGTTAATGTAGGTGCGGATGTTGTTGGTGTTCTTGCTAAGGATATTACGCTTATGCCCTTGCTTTATTCGCTTCTTACGGATGGTACTGCTCATGCTGCTAAGAAAGCGCGTTTTCTCATTCAGATTCTACAGGATTTTAACGAAACAGCAAGTTCGAGATTGAAAGGTTCTTCAATTTTGCGTCAATTGAATGGGTTGGAACTTAGGAATTAG 2079 0.4084 MNTHLPNHRDRRILSFPAVHPCEGISTATLVASLITLSQTICNFQPQIFPTQKRNARETIRQISIISIFLHEIQDNYSLIPNSIIISFSELHFTLQKIHFLMQDCTLEGANLLLLSKSKQVAEHFCSLIRAVATSLDVLPLHRIEICDEVKELVEMVAKQARKAKFEVNPSDEIATKKLYSVLHQFERGTEPKLHIMQEILDYLKIKNWNDCNKEIKFIENEISLLEYRDCNERELPLLSSLVGFLSYCRVVIFEFESLDQNSDQSEARISTEIISITCLNPDDFRCPISLELMTDPVTISTGQTYDRASIYKWLKAGNKTCPKTGENLNSTELVPNTALKKLIQQFCTDNGVSFSKSCNRNRDITKTISPGSSAAAHAIQFLSWFLTRRLVFGTEKQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHSNGPENIMGHNGLKPIISVLKNGLSLEAQQIAAAIIFYLCSVKEYRKSIGENQDAIPCLVELVKQGTTCGKKNAVVAIFGLLLLPRNHQRVIEAGAVHALVSILHPSYNYKEELVTEALAVIAALAENFDGANAVLEASALTLITGMLRSATSRAGKEHCASILLSLCVNVGADVVGVLAKDITLMPLLYSLLTDGTAHAAKKARFLIQILQDFNETASSRLKGSSILRQLNGLELRN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi40g00019 692 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Vivi40g00019 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Vivi40g00019 692 FunFam RING-type E3 ubiquitin transferase 361 676 - -
Vivi40g00019 692 Pfam Armadillo/beta-catenin-like repeat 416 448 IPR000225 GO:0005515
Vivi40g00019 692 SUPERFAMILY RING/U-box 282 355 - -
Vivi40g00019 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 594 IPR000225 GO:0005515
Vivi40g00019 692 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Vivi40g00019 692 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Vivi40g00019 692 SMART arm_5 538 581 IPR000225 GO:0005515
Vivi40g00019 692 SMART arm_5 454 495 IPR000225 GO:0005515
Vivi40g00019 692 SMART arm_5 412 453 IPR000225 GO:0005515
Vivi40g00019 692 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Vivi40g00019 692 CDD RING-Ubox_PUB 282 334 IPR045210 -
Vivi40g00019 692 SUPERFAMILY ARM repeat 393 666 IPR016024 -
Vivi40g00019 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Vivi40g00019 692 PANTHER U BOX DOMAIN-CONTAINING 68 665 - -
Vivi40g00019 692 Gene3D - 359 688 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi40g00019 4 670 U-box Gene Family AT1G60190 40.325 9.99e-167 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi40g00019 - - tpra:123884536 1083.17