Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi40g00017 ATGAAGGAAAGCAGTGATGGATTTGTTAGAGCGGATCAGATTGATCTGAAAAGCATAGATGAACAGCTTGAGAGACATCTCAACAAAGTGTTGACTATTGACAAGAAAAAGCGCGTTGAAGATGAAGATTCTACTGCTTCTAATGTTTTTGATCATGCTCGAGTTCATACCAGCAGCGCTGGTACTTCTCCTAAGGCTGCTAAGTTCAAAACGAACTTCAAGAAGCAGAAGCAGGATTGGGAAATTGAGCCTTCTAAGCTTATTATCAAAAGTGTTATTGCTCGGGGGACTTTTGGGACGGTGCATCGTGGTGTCTATGATACTCAAGATGTTGCTGTTAAATTGCTTGACTGGGGTGAAGAAGGCCAAAGGACAGAAGCTGAGGTTTCTTCACTAAGGGCGGCGTTTATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTTACAAAGTTCATAGGAGCCACAATGGGATCTGCAGAATTGCAGATACAAACCGATACTGGTCTAATTGGCATGCCAAGCAATGTCTGCTGTGTTGTTGTGGAGTATCTTGCTGGAGGTACTCTGAAATCATACCTGATAAAAAACAGGAGGAGGAAATTAGCTTTTAAGGTTGTCATCCAGCTGGCGCTTGATTTAGCAAGAGGGCTTAGTTATCTTCACTCTCAGAAGATTGTCCACAGAGATGTGAAGACAGAGAACATGCTGCTGGATAAGACTCGCACAGTGAAAATTGCTGATTTTGGTGTTGCACGAGTTGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGAACTCTTGGTTATATGGCTCCTGAGGTTTTAAATGGAAACCCATACAACAGGAAATGTGATGTGTACAGTTTTGGAATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCCGACCTTAGTTTCTCAGAAATTACTTCAGCTGTTGTTCGCCAGAATTTGAGACCAGAAATGCCAAGATGCTGCCCAAGTTCTCTTGCAAATGTAATGAGGAAATGCTGGGATGCCAGTCCTGATAAGCGGCCAGAGATGGAGGAGGTTGTCTCCATGCTGGAGGCCATCGACACATCCAAAGGTGGGGGCATGATCCCCGGTGATCAGCAGCAGGGTTGTTTATGCTTCCGTAAGCATAGAGGGCCATGA 1173 0.4408 MKESSDGFVRADQIDLKSIDEQLERHLNKVLTIDKKKRVEDEDSTASNVFDHARVHTSSAGTSPKAAKFKTNFKKQKQDWEIEPSKLIIKSVIARGTFGTVHRGVYDTQDVAVKLLDWGEEGQRTEAEVSSLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDTGLIGMPSNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEMPRCCPSSLANVMRKCWDASPDKRPEMEEVVSMLEAIDTSKGGGMIPGDQQQGCLCFRKHRGP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi40g00017 390 CDD STKc_MAP3K-like 93 361 - -
Vivi40g00017 390 FunFam Serine/threonine-protein kinase HT1 187 372 - -
Vivi40g00017 390 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi40g00017 390 SUPERFAMILY Protein kinase-like (PK-like) 70 361 IPR011009 -
Vivi40g00017 390 Gene3D Phosphorylase Kinase; domain 1 67 170 - -
Vivi40g00017 390 PIRSF ILK 29 370 - -
Vivi40g00017 390 Gene3D Transferase(Phosphotransferase) domain 1 188 377 - -
Vivi40g00017 390 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi40g00017 390 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 364 - -
Vivi40g00017 390 FunFam Kinase suppressor of Ras 1 76 170 - -
Vivi40g00017 390 Pfam Protein tyrosine and serine/threonine kinase 89 361 IPR001245 GO:0004672|GO:0006468
Vivi40g00017 390 PRINTS Tyrosine kinase catalytic domain signature 288 310 IPR001245 GO:0004672|GO:0006468
Vivi40g00017 390 PRINTS Tyrosine kinase catalytic domain signature 184 197 IPR001245 GO:0004672|GO:0006468
Vivi40g00017 390 PRINTS Tyrosine kinase catalytic domain signature 222 240 IPR001245 GO:0004672|GO:0006468
Vivi40g00017 390 PRINTS Tyrosine kinase catalytic domain signature 332 354 IPR001245 GO:0004672|GO:0006468
Vivi40g00017 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi40g00017 1 322 MAP Kinase Kinase Kinase AT5G50000 77.950 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi40g00017 PK_Tyr_Ser-Thr 6.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi40g00017 - - gmx:100807921 709.138