Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi408g00010 ATGATTTCTGAAGAAAATAATAAACCTGTCACTGATGAAGATCATGATGCTTCTCTTCCTGTTGCTCACAAGGATAGTCATGATTCGACGGGGATAACTGAAGAAATCACGCATGTTCCTCCGCGGAAGAAGCAGAATCTTCTCTTGGAAATACCAACAAGAACACCAGAAGAGTGTTCACAGGATTATGTTGCAGTCAAAATTCCAATGACACCGAGTCCTACTCCTAAGAGAGTGAATTTTCTGATGAGTTCACGGTCGGTTGATGCTCCGATAAATAATTCTCCTGGATCTGCAACATCAAGAGGCAAATCATCGTTAAGAAACATCCTACCGAAATTGAGCTTCAGGAGTAGGACACCGGTAGCAGATAATGAAAAGACGAACACATCAACTATGGAGGTTTCCTCTTCGGGCCCTCGAGAAAAGCCTTTGATCTCGAGATCATTGTCACTTAGTAAAATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATCAGAAGAAATTGGACACTCGAATACCGAATCCACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTGAGTAAAAGAGAGACTCGACTTAAGATAGCGCGCTCTCTTTCAATGCCTGCCAACAACAAGAAGGACAAAAGCCTAAGGAGGATGGATTCGTTTTTTCGCGTTGTTTCTTCTACCCCTCGAGTAAAGGAAGGAAATGAATTTTCGAGAACTTCTCCAACAAAGGATACTGAAATCGAAGATGCTGATGATGGCGAAGATATAGCTGAAGAGGAGGCAGTGTGTAGAATTTGTCTGGTTGAATTATGTGAAGGAGGTGAAACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCAAAGAGGATGTTAGAAACCTTCCTGTCACTCTCCTACGGATTCAAAGTGTTCGAAATCGATTTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGTACAGGGTTTGGCAGGAAGTTCCAGTGCTTGTTATTGTTAGCATGTTGGCATACTTTTGTTTTCTTGAGCAACTGTTGGTTACAAAAATGGGAACCGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTCGGTGTGGTAATGAGTGTAAGCTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACGACAGGCTTCATTAGAGCAACAACATGGCCCTCTACCGATAACACAAGCAGGACAACAGCCTCGGCCTGCAAACACGCCACGATCAGGTGAATCCAACCACAATCAATCTATAGTGCAAAATTAA 1518 0.4249 MISEENNKPVTDEDHDASLPVAHKDSHDSTGITEEITHVPPRKKQNLLLEIPTRTPEECSQDYVAVKIPMTPSPTPKRVNFLMSSRSVDAPINNSPGSATSRGKSSLRNILPKLSFRSRTPVADNEKTNTSTMEVSSSGPREKPLISRSLSLSKIFTPRMKRTSSLPSEEIGHSNTESTHGGNGSVGGPLSKRETRLKIARSLSMPANNKKDKSLRRMDSFFRVVSSTPRVKEGNEFSRTSPTKDTEIEDADDGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRNRFTGASRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRRQASLEQQHGPLPITQAGQQPRPANTPRSGESNHNQSIVQN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi408g00010 505 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Vivi408g00010 505 SMART ringv_2 263 312 IPR011016 GO:0008270
Vivi408g00010 505 MobiDBLite consensus disorder prediction 233 254 - -
Vivi408g00010 505 MobiDBLite consensus disorder prediction 1 41 - -
Vivi408g00010 505 MobiDBLite consensus disorder prediction 88 113 - -
Vivi408g00010 505 PANTHER OS02G0165000 PROTEIN 26 473 - -
Vivi408g00010 505 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
Vivi408g00010 505 MobiDBLite consensus disorder prediction 88 191 - -
Vivi408g00010 505 MobiDBLite consensus disorder prediction 472 505 - -
Vivi408g00010 505 MobiDBLite consensus disorder prediction 1 45 - -
Vivi408g00010 505 CDD RING_CH-C4HC3_MARCH 264 312 - -
Vivi408g00010 505 SUPERFAMILY RING/U-box 260 314 - -
Vivi408g00010 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 319 IPR013083 -
Vivi408g00010 505 MobiDBLite consensus disorder prediction 121 185 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi408g00010 220 318 C3H Transcription Factor Family AT2G37950 36.000 1.84e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi408g00010 - - gmx:100788108 711.449