LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi407g00006	ATGGCCGCTGCTGCCAACCACCACCTCCTCCTCCTCCTATCTCTCTCCTTACTCTCTCTCTCCACCGCACCACCACCACCATCAGAGACTCAATCCCTCCTCAAACTAAAACTATCTCTCAAAAACTCCGACAAAAACTTAGCCTCATGGATCCCAAACGTCTCTCCATGTTCAGGCACATGGACTGGCGTTATCTGCTTCAACAATGTGATCACCGGTCTCCATCTCTCCGACCTCGGCCTATCTGGAACGATAGACGTCGACGCTATCTCCGAGATACGCGGCCTAAGAACACTCAGCTTCGTCAACAACTCGTTCTCCGGTCCTATTCCGCAGTTCAACAAACTCGGCATGATCAAGTCTCTTCTCCTCACGCAAAATCAATTCTCCGGGCCTATTCCGCCGGACTTTTTCGCTCATTTAACCTCCTTGAAGAAAATATGGTTCACCAATAACAAATTCACAGGCAGCATTCCGGTTTCCTTAACCGAACTCGACCTCCTCAAAGAGCTTCACCTCGAAGGAAACCAGTTCTCCGGGCAGTTACCGAATCTCAAACAAGATATCAAATCATTCGACGTCTCGAATAACAAGTTAGAAGGTCCTATTCCAGAAGGCCTGGCCAAATTCAGTGCAGCTTCGTTTTCTGGAAATGAAGGTTTGTGTGGAAAACCGTTGGAAAAACAATGTGACGCTTCGTCTTCCTCCGAGTATTCGCTAGCAGATGGCCTAACAGAAAATAGTTCAGGATCTGATTTGGCAGTTAAGGTGATAGTGATTCTGATACTGGCAGTTATAGCAGCGGGTATATTTATGTTTGTGAAGTCTCGACAACATAGACGCGACGATGATTTCAGCGTCGTGAGCCGAGACTCCAGCCGAGACTCCAGCGTCGAAGAAGTCATGCAAGTGAACGTGCCAATAAGTAGATCTACGTCCGCATCAGAGAGAGTCGGGAGAAGGAACGTGGGAGAATCGTCGAAAAGAGGAGGAATGGGGGGTGGGACTAGAAATGGGCTAGGTGATCTTGTAATGGTGAATGATGAGAAGGGTACATTTGGTTTACAGGATTTGATGAAAGCTGCTGCTGAGGTATTGGGGAATGGCGGATTAGGATCGGCTTATAAAGCGGCGATGGCGAACGGGTTGAGTGTGGTTGTGAAGAGGATGAGGGAGATGAATAAAATCGGTAAAGACGTGTTCGATGCTGAGATGAGACAGTTTGGGAGGATTCGACATGCTAATATTTTGACTCCTTTGGCTTATCATTATAGGAGAGAAGAAAAGCTTTTCGTTACCGAGTATATGCCTAAAGGAAGCTTGTTATACGTCTTGCACGGTGACAGAGGATCGTCTCATGCGGAGTTAACTTGGCCTATCCGATTAAAGATTGCTAAAGGAATCGCGAGAGGTTTAAGCTTCCTTTACAACGAGTTTTGCACGTATGATTTGCCACATGGAAACCTGAAATCGAGCAATGTTCTAATAAACGATGAATATGAGCCTATGTTAAGTGATTATGCTTTTCAACCACTGATCAACCCGAGCATTGCAGTTCAATCAATGTTTGCATTCAAAACACCGGATTACGCTCAAAACCAGAAGCTTACGCAGAAAGCCGATGTTTATTGCCTTGGAATCATCCTTCTTGAACTCATAACAGGGAAATTCCCATCTCAGTATCATAGTAATGGTAAAGGTGGTACTGATGTTGTTCAATGGGTTCTAACGGCGATTTCTGATAGAAGAGAAGCTGAATTGATTGATCCTGAATTACAAAAGAATGCACCAAATTCGACGAATAATATGCTCCAACTTCTCTTAATTGGTGCTGCTTGTACCGAAAGTAACCCCGAACAAAGAGTACATATGAAAGAAGCTATTAGAAGGATAGAGGACATACAACTCTAA	1911	0.45	MAAAANHHLLLLLSLSLLSLSTAPPPPSETQSLLKLKLSLKNSDKNLASWIPNVSPCSGTWTGVICFNNVITGLHLSDLGLSGTIDVDAISEIRGLRTLSFVNNSFSGPIPQFNKLGMIKSLLLTQNQFSGPIPPDFFAHLTSLKKIWFTNNKFTGSIPVSLTELDLLKELHLEGNQFSGQLPNLKQDIKSFDVSNNKLEGPIPEGLAKFSAASFSGNEGLCGKPLEKQCDASSSSEYSLADGLTENSSGSDLAVKVIVILILAVIAAGIFMFVKSRQHRRDDDFSVVSRDSSRDSSVEEVMQVNVPISRSTSASERVGRRNVGESSKRGGMGGGTRNGLGDLVMVNDEKGTFGLQDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKIGKDVFDAEMRQFGRIRHANILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGSSHAELTWPIRLKIAKGIARGLSFLYNEFCTYDLPHGNLKSSNVLINDEYEPMLSDYAFQPLINPSIAVQSMFAFKTPDYAQNQKLTQKADVYCLGIILLELITGKFPSQYHSNGKGGTDVVQWVLTAISDRREAELIDPELQKNAPNSTNNMLQLLLIGAACTESNPEQRVHMKEAIRRIEDIQL	636

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi407g00006	636	Gene3D	Ribonuclease Inhibitor	28	137	IPR032675	-
	Vivi407g00006	636	Pfam	Protein kinase domain	364	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi407g00006	636	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	12	635	IPR046959	-
	Vivi407g00006	636	SUPERFAMILY	L domain-like	49	210	-	-
	Vivi407g00006	636	SUPERFAMILY	Protein kinase-like (PK-like)	364	631	IPR011009	-
	Vivi407g00006	636	Pfam	Leucine rich repeat	120	178	IPR001611	GO:0005515
	Vivi407g00006	636	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	112	203	-	-
	Vivi407g00006	636	Gene3D	Phosphorylase Kinase; domain 1	337	435	-	-
	Vivi407g00006	636	MobiDBLite	consensus disorder prediction	310	337	-	-
	Vivi407g00006	636	Pfam	Leucine rich repeat N-terminal domain	27	66	IPR013210	-
	Vivi407g00006	636	Gene3D	Transferase(Phosphotransferase) domain 1	436	636	-	-
	Vivi407g00006	636	Gene3D	Ribonuclease Inhibitor	138	231	IPR032675	-
	Vivi407g00006	636	CDD	STKc_IRAK	366	634	-	-
	Vivi407g00006	636	ProSiteProfiles	Protein kinase domain profile.	360	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi407g00006	10	636	Receptor kinase-like Gene Family	AT3G42880	50.234	0.0	621

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Vivi407g00006		Pkinase	2.9e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi407g00006	-		-	gmx:100790660	804.668