Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi406g00002 ATGCAACCGACTTCTGGTGGCGGTGGCTTGAAGCGTTTCCGATCAACTCCGGCGAGTTGGATAGAATCGTTTATTCTGAAAGAAGAAGAGGAAGACGAAAATCAACAACAAGATAATTTCAGTTTCACTCAACTGCTTTCCAATAACGCTGCTGCTGGTCCTTCAACTTCCGATTCTCAACCATATTTGCCTGATTACTACCAATACTCTTCACCGCATACTTCCGCCGCCGCCAATGTTAGTAACAATACTTTCACACAGGGAGTTGAGGATAGTGATAATGCACTGGACCTGAAAATGGACAAAATTTTAGAGGATTCGGTTCCTTGCAAGATTCGGGCAAAGCGTGGCTGTGCTACACATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGGATTAGCGACCGCATAAGAAAACTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAACACTGCAGAGATGTTAGATGAGGCAGTAGCTTATGTCAAGTTTCTACAAAATCAAATTGAGGAACTATCAGAACAACAACAGAGGTGTACGTGCACGATTCATGAGTAA 567 0.4356 MQPTSGGGGLKRFRSTPASWIESFILKEEEEDENQQQDNFSFTQLLSNNAAAGPSTSDSQPYLPDYYQYSSPHTSAAANVSNNTFTQGVEDSDNALDLKMDKILEDSVPCKIRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQNQIEELSEQQQRCTCTIHE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi406g00002 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 185 IPR036638 GO:0046983
Vivi406g00002 188 Gene3D - 119 188 IPR036638 GO:0046983
Vivi406g00002 188 SMART finulus 124 174 IPR011598 GO:0046983
Vivi406g00002 188 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
Vivi406g00002 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Vivi406g00002 188 Coils Coil 158 185 - -
Vivi406g00002 188 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 182 - -
Vivi406g00002 188 FunFam Transcription factor bHLH130 family 119 187 - -
Vivi406g00002 188 CDD bHLH_AtbHLH_like 123 176 IPR045239 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi406g00002 8 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 48.947 2.55e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi406g00002 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi406g00002 - - gmx:100527723 197.978