Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g08023 ATGAATGCGCATATAATCCTTTCAATAGCCGTTGTTTTCACCATTGAAAAATGGATCACTATTATGCGCCCATATCAGGTGAGTCGAAACCAATTAAACAAGTTACTGTTAACGAGAATTGCAGCAGGTACTTCCTCAAGCTTCATGAGTGTGACCATGAGTCAAAGCAACAGCCATGATGCCATTAACAATGACAACAACAAGCCAGATGATCATGCTCACGACATTGTGATGCCTGGGTTTCGTTTCCACCCAACTGAAGAAGAACTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCCTTTCAATGTCGAGCTTATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGGGTTGGCAGCAATTGGTGAAAAGGAGTGGTACTTTTATGTGCCCCGAGATAGGAAGTATCGTAACGGTGATCGTCCAAATCGTGTTACACCTTCTGGGTATTGGAAAGCAACAGGAGCTGATAGGATGATTCGAACAGAGAACTTCCGTTCAATCGGGCTTAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCATCCGAACAAGTTGGATAATGAACGAGCATCGTTTGCCTCAACATGAAACTCAAAGATTAATTCATAAGGCTGAAATATCACTTTGCCGTGTTTACAAGAGAGCGGGTGTGGAAGACCATCCTCTTCCTCCCTCCATATCCTTCCCTCGTTGTCTCCCATCAAGCTCATCGTCAACAAGTTCATATTTGGACAAGAAACAACACCTGAACATGGCGTTTATGGGAATTAGTCATCTACAGCCACAGCCACAGGTAATTGATGATCATATAGTTTATAAAATGAATGAAAGCGACCCAACTGTTATTCCAGGGCTAGTAGCTCCCATAGATCAGCAAGTACAACCTGCAGATCCTTCTGTGTGTGGTACTTTCATCCCAACCAGCAGTGTTATGGCAGATGATGATCTAAACATACTAACAAGTTATCAACAACAAAGCTATCCAAATAAGTTTTCTACTTTGCTCATGCAATCACCTACTCTGCCTCTAAACTTGCTACCGAATTCGCTCACAACCATCTTCTCTGAGCGACAGTGGAAATGGAATAACTATAACCCTATCCCTGAGGCTGCAAACAGAGAGCACAGTACGTAA 1167 0.4327 MNAHIILSIAVVFTIEKWITIMRPYQVSRNQLNKLLLTRIAAGTSSSFMSVTMSQSNSHDAINNDNNKPDDHAHDIVMPGFRFHPTEEELVEFYLRRKVEGKPFNVELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEHRLPQHETQRLIHKAEISLCRVYKRAGVEDHPLPPSISFPRCLPSSSSSTSSYLDKKQHLNMAFMGISHLQPQPQVIDDHIVYKMNESDPTVIPGLVAPIDQQVQPADPSVCGTFIPTSSVMADDDLNILTSYQQQSYPNKFSTLLMQSPTLPLNLLPNSLTTIFSERQWKWNNYNPIPEAANREHST 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g08023 388 FunFam NAC domain-containing protein 35 86 228 - -
Vivi3g08023 388 SUPERFAMILY NAC domain 77 224 IPR036093 GO:0003677|GO:0006355
Vivi3g08023 388 ProSiteProfiles NAC domain profile. 77 225 IPR003441 GO:0003677|GO:0006355
Vivi3g08023 388 Pfam No apical meristem (NAM) protein 79 203 IPR003441 GO:0003677|GO:0006355
Vivi3g08023 388 Gene3D NAC domain 86 228 IPR036093 GO:0003677|GO:0006355
Vivi3g08023 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 76 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g08023 Vivi-Chr3 219213303 219218077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g08023 76 258 NAC Transcription Factor Family AT2G02450 79.679 3.45e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g08023 NAM 9.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g08023 - - vvo:131641984 701.434