Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g08001 ATGGGGACTGAAAAGCTTAGATCTTATGCAAACTTTCTTGAGAACTCTATGCCTTATTTTGCCATGATCCTTTTGCAGTTTGGCTATGCAGGCATGAACATTATAACCAAGCTTTCTCTCAATGGTGGCATGAGTCACTATGTTCTTGTTGTTTATCGCCACGCTTTCGCTACCATCGCTATAGCTCCATTCGCCATTATCTTCGAAAGGAAGGCTCAACCAAAGATTACATTTTCAGTTTTCATCCAAATTTTTCTCCTAGCTTTACTTGGGCCAGTGATAGATCAAAACTTATACTATGCTGGGTTGAAATTAACATCTCCAACTTTCTCATGTGCAATGAGCAATATGCTTCCTGCCATGACTTTCGCAATCGCGGTTTTATGCCGGATGGAAATTATAAACATGAAGAAATTGAGATGCCAAGCAAAGGTGGTTGGAACTTTATTAACTGTGGCTGGAGCAATGTTGATGACATTATATAAAGGTCCTATTTTGGATTTGCTATGGACTAAAGAAACACCTCATAGTAATCAAATTTCAACAAACATCACAAGATCTTCAAGCAAAAATAATTGGCTCATTGGTTCCATTTTACTCATTATTGCTACACTTGCATGGTCATCCCTCTTTGTGTTACAAGCTAGGGCTATAGAAACATACAAGAATCATCAGCTAACACTCACATCACTTATATGTTTCTTTGGGACACTTCTAGCTTTTGTTGCCACTTTGGTTATGGAACACAAAGTTTCTGTTTGGACAATTGGTTGGGATATGAATTTATTAGCTTCTGCATATGCTGGGATAGTTGCATCAAGTATATCATACTATGTACAAGGATTGGTGATAAAAAAGAAAGGGCCTGTTTTTGCAACTTCATTTAGTCCTTTGATGATGATCATTGTAGCAATCATGGGTTCATTTTTCCTTGCAGAGCAGATTTTTCTTGGAAGTGCAATTGGTTCCATCTTGGTTGTGATAGGCTTATATTCTGTTTTATGGGGAAAGCACAAAGAACAAATGGAAAGTAAAGTAGCACCAGATGATAAACCATTGCCCATAAAAGGTGTTTGGGTGAATGGAAATAAAGGGACACTTTCTGAAGCCATTGATCAACTTAGTGAAGCAAAATCAGATCAGAAAGTAGAATCAAACATTTCTCTTGTTATTATAAATTACAACAAAAGTTAA 1194 0.3693 MGTEKLRSYANFLENSMPYFAMILLQFGYAGMNIITKLSLNGGMSHYVLVVYRHAFATIAIAPFAIIFERKAQPKITFSVFIQIFLLALLGPVIDQNLYYAGLKLTSPTFSCAMSNMLPAMTFAIAVLCRMEIINMKKLRCQAKVVGTLLTVAGAMLMTLYKGPILDLLWTKETPHSNQISTNITRSSSKNNWLIGSILLIIATLAWSSLFVLQARAIETYKNHQLTLTSLICFFGTLLAFVATLVMEHKVSVWTIGWDMNLLASAYAGIVASSISYYVQGLVIKKKGPVFATSFSPLMMIIVAIMGSFFLAEQIFLGSAIGSILVVIGLYSVLWGKHKEQMESKVAPDDKPLPIKGVWVNGNKGTLSEAIDQLSEAKSDQKVESNISLVIINYNKS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g08001 397 PANTHER WAT1-RELATED PROTEIN 17 342 IPR030184 GO:0016020|GO:0022857
Vivi3g08001 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Vivi3g08001 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 339 - -
Vivi3g08001 397 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Vivi3g08001 397 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g08001 Vivi-Chr3 218014693 218020990 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g08001 1 374 Nodulin-like Gene Family AT5G07050 66.053 2.61e-176 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g08001 - - gmx:100799947 571.237