Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07981 ATGTCTCGTCGCGATGGAGGCACCGCCGATTCTTCTTCGTCGGGACATCCACCTCCTCCGTCATATGCTTTTGCATCTGTCACCCCTGCTCCATCTGTCGTAGCGCTGGCAGTTGGTCTGTCTATTGCTGCACCGGTTGTTCATCCATCTTTAGCAGCACCGGTTGTTCGTCCATCACTAATAGCGCCGGTTGTTGGTGCGTCTCTAGTAGCGGCGATTAAGATTCCTAACCGGCCTGAATACGGTCAGTTGGGAAGAAAAATTCAAGTTCGTGTTAATCATTTTCAGTTGCAAGTTGCTAATAATTCTATACACCATTATAAGGTATCTTTTTCGCAAAAGATTATTTCAAAAGAATTGTGCAAAAATATTATCAACCAGTTAGTCAAAATGTACCGGGAATCTCGTTTAGACAACCGCATACTTGCTTACGATGGAAGAAATAACTTGTTTACTGCTGGACCGCTACCTTTTACCTCCGAGGTTTTTGTGGTTAACTTGACCGATGAAAATAGAGGATCCTCTTCTGATTCTGATAGGAAAAAGCGTGACCGGAAGTTTAAGGTTACTATAGAGTTCGTTTCCAAGACGGATCTCTACAGCCTTACTCAGTTTCTCCGAGGAATGCCGCTGGACAGTCCTTTCGAAACCATTAAAGTTCTTGTCATTGCTTTGAAGGCAACTTCATATGAAAAATATATTGCGGCTGGGAGCTATTATAGAGGTTTTCATCAAAGCATTAGGCCAACCCAAATGGGACTTTCCTTAAACATAGATGTAACTTCAGGGTCTTTTTATGAACCAATTCTGGTCAGTGAGTTTGTTTCCAAATTTTTTAATTTGGATTTGTCAGCGCCAATGTCACTGTCTGATGAAGATCGAGTAACGATTGAGAAAGTTTTGAAAGGTGTAAAGGTAAAAATATGTTTTGGTGAGAAAACAAGGAGGTGCAAGGTGACCAGTCTCTCAAGAGAGCCACTTCGGGACCTAACGTTTATCCGGGAAGTCAGTAGGTGTACCAGAAATGTCATTGAATATTTAGTTGAGAAATACGATATTCGAGTAACTCAACCTCTTCTTCCCGCTCTCCAAGTTGGAACGGACTTGAGACCCACATATTTCCCAATGGAGCTATGTCAAATTGAGGATGGACAGATATACTCCCAAATATCAAATGAAAACCAAGTAGCCTCTTTTTTAAGAGCTTCTTTGCAGAGTCCTGGTCATGTACAAAGACTAAATGATATTAAAGAATTTGTGAAGCGTACCGATTTCAACTCAAACAACGTTACGAAAGAAGCGGGTTTAAATGTTATAAAGGAGCCAATCATTGTTGATGCGCGCATTTTATCTCCTCCAACGCTTAAATTTAATGGAATTGGGGAGAACTCAATAGTTTACCCTAGTATGGGTCAGTGGAGTTTGATTAATAAGAGATTCTATGAAGCTGGCAATGTGAAACATTGGAGTTGTATTTCCTTTTCTGATAAAGTGAACCCTACTACTTTTTGTTTCAAATTGATTGAAATGTGTGAAAGCAAGGGAATGACTTTCAACCGAAAGCCTATAGTACCAATAACCATGGTGAACTCAAGTCAATTTGAGAGTCAGCTTGTTGAATTTGACAAAAATTGTAAGGAAACACTTGCTAAAACAAAGCAGGTGGGACAACTACAATTGTTGATTGTAGTCTTGCCGGATTTTACGGGATCATCATATGATAGAGTGAAGCGTGTATGTGAGACTGAATTAGGTATAATTTCTCAATGCTGTCAACCGCAAAAAGCCGCCCGGATGAATCCAAAATATCTTGAAAGTTTGGCGTTAAAGATCAACCTCAAGTCAGGAGGTCGTAACATGGTGTTGAATGATGCATTGAGTTTAGATAAAAGAATTGATCTTGTAACGGATAAACGAACAATAATATTTGGTGCTGATGTAACTCACTATCATCAGGGAGAAAATTCATGTCCTTCTATAGCTGCAGTGGTTGCCTCGATGGATTGGCCTTGTGTCACAAAATATAGGGGTACTGTTTCTGCCCAGGCTTCTCGCACGGAGATAATTGAAGATCTTTTTAAAAGAACAGAGCATCCTTCTTCGGAGGGAGTTCAGTTTGGTGGAATGATAAGGGAGTCACTCTTAGCTTTCCAAAAATCAACTGCTCGTATGCCTGATAGGATTATATTTTACAGAGACGGAGTAGGTGAGAGACAGTTCAATGAGGTTTTGCTTAATGAAATGGGGGCAATTAAGATGGCTTGTAAATCAATAGGTGATACGTATCGACCTACCATTACTTTTGTAGTGGTCATAAAGAGACATCACACTCGTCTCTTTCCTGTCACCAACAAAGAAACTAGTGGAAAAAGTGGAAATGTTATGCCAGGAACTGTGGTCGACACCAGCATTTGCCACCCCAGGGATTTTGATTTTTATCTCAACAGCCATGCTGGAATTCGGGGTACTAGTAAACCCACTCGTTATTATGTGCTGTATGATGAAAATAATTTCACTATAGATGAGTTTCAGACCTTGACCAACAACTTATGCTACACTTATGCGAGGTGTAATAGATCACTTTCTATAGTTCCTCCGGTTTATTATGCACACTTGCTAGCTTTCCGTGCTAGATCCTACATCAGTGCAGTTGGTAACAGGAATACAACCAACTCTGTGTCGACTCTGCCACCTATCTCAGATGAAATAAAAAACTTTATGTTTTACTGTTAA 2733 0.4029 MSRRDGGTADSSSSGHPPPPSYAFASVTPAPSVVALAVGLSIAAPVVHPSLAAPVVRPSLIAPVVGASLVAAIKIPNRPEYGQLGRKIQVRVNHFQLQVANNSIHHYKVSFSQKIISKELCKNIINQLVKMYRESRLDNRILAYDGRNNLFTAGPLPFTSEVFVVNLTDENRGSSSDSDRKKRDRKFKVTIEFVSKTDLYSLTQFLRGMPLDSPFETIKVLVIALKATSYEKYIAAGSYYRGFHQSIRPTQMGLSLNIDVTSGSFYEPILVSEFVSKFFNLDLSAPMSLSDEDRVTIEKVLKGVKVKICFGEKTRRCKVTSLSREPLRDLTFIREVSRCTRNVIEYLVEKYDIRVTQPLLPALQVGTDLRPTYFPMELCQIEDGQIYSQISNENQVASFLRASLQSPGHVQRLNDIKEFVKRTDFNSNNVTKEAGLNVIKEPIIVDARILSPPTLKFNGIGENSIVYPSMGQWSLINKRFYEAGNVKHWSCISFSDKVNPTTFCFKLIEMCESKGMTFNRKPIVPITMVNSSQFESQLVEFDKNCKETLAKTKQVGQLQLLIVVLPDFTGSSYDRVKRVCETELGIISQCCQPQKAARMNPKYLESLALKINLKSGGRNMVLNDALSLDKRIDLVTDKRTIIFGADVTHYHQGENSCPSIAAVVASMDWPCVTKYRGTVSAQASRTEIIEDLFKRTEHPSSEGVQFGGMIRESLLAFQKSTARMPDRIIFYRDGVGERQFNEVLLNEMGAIKMACKSIGDTYRPTITFVVVIKRHHTRLFPVTNKETSGKSGNVMPGTVVDTSICHPRDFDFYLNSHAGIRGTSKPTRYYVLYDENNFTIDEFQTLTNNLCYTYARCNRSLSIVPPVYYAHLLAFRARSYISAVGNRNTTNSVSTLPPISDEIKNFMFYC 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07981 910 ProSiteProfiles PAZ domain profile. 272 383 IPR003100 GO:0005515
Vivi3g07981 910 SMART DUF1785_2 193 268 IPR014811 -
Vivi3g07981 910 CDD Piwi_ago-like 432 881 IPR045246 -
Vivi3g07981 910 Pfam Argonaute linker 1 domain 240 267 IPR014811 -
Vivi3g07981 910 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g07981 910 MobiDBLite consensus disorder prediction 1 19 - -
Vivi3g07981 910 Pfam Piwi domain 561 881 IPR003165 GO:0003676
Vivi3g07981 910 SUPERFAMILY Ribonuclease H-like 556 880 IPR012337 -
Vivi3g07981 910 Pfam N-terminal domain of argonaute 86 221 IPR032474 -
Vivi3g07981 910 Pfam PAZ domain 292 395 IPR003100 GO:0005515
Vivi3g07981 910 Gene3D paz domain 263 386 - -
Vivi3g07981 910 SMART Piwi_a_2 560 882 IPR003165 GO:0003676
Vivi3g07981 910 SUPERFAMILY PAZ domain 264 425 IPR036085 GO:0005515
Vivi3g07981 910 Pfam Argonaute linker 2 domain 411 457 IPR032472 -
Vivi3g07981 910 ProSiteProfiles Piwi domain profile. 560 882 IPR003165 GO:0003676
Vivi3g07981 910 Gene3D - 632 910 IPR036397 GO:0003676
Vivi3g07981 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 883 - -
Vivi3g07981 910 CDD PAZ_argonaute_like 271 381 - -
Vivi3g07981 910 Gene3D - 449 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07981 Vivi-Chr3 217668139 217673171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07981 61 910 Eukaryotic Initiation Factors Gene Family AT1G48410 46.274 0.0 784