Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07969 ATGATCAGAAAAAGTGATTGTAGCAGCAGAAGAATGTTTCATCAATGGTTATTTACCATCAAATTCATATACCTTTTCTATTCTGTTATAAGTCAAAACAACAGCAATTCACAAGAGCTACTTGATTATAGATATGCTTGTTTGGATCAATCTTCTATAGCTCCCTCTACAACATATCAAACAAACCTCAACAGTTTAATCTCTTCATTATCATCAGATTCTGCAACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAATGATCAAAACAATATAGTTTACGGACAATACCTGTGTCGCGGCGATGTTAATAAAACTCTTTGCCATTCGTGTGTCCAAAACTCAAGCAGATTGTTGAAACAGCACTGTCCTAATAATGCTTCAGCAATTTTGTGGTACCCTTTTTGTCTTTTGAGATACTCAAATCAGAATTTCTTTGGTAACCTTACGATAAGACCAAGGATTCCTATGTTTGATGCAACACAGAACTTGACTAGTGCGGGAGAATTTGATAGTGATGCGAGGATTTTGATGAACGGTTTGATACAGATGGGGTCACAGACAGCTTTGATGTTTGGTACACATATGTTTAACATAAATGGTACTCAAAGACGGTACGGTTGGGTGCAGTGTAGTAGAGATATTACTAGTGAGGAATGTGGAACTTGTTTGAGTAATATGCTTGAGGATGTCGAGAATTGTTGCGAGGAGAAGAAAGTGTGGAGAGTTTTTTCTCCAAGTTGTATTATGATGTATGAAACTCAACCATTCTTTCTAAATAATACAGGCTCTAATGCTCCTGCGCCTCAACAAGCCGCAGGAAACGACGGAACGAAGTCATGGATCATAATAGTCATTGTAGTAATCGGAACAGTAGTAGCAGCTCTACTCGCTTTGAGTGCATATTATTTATGCTGCTTAAAGCATAGAAAAGATAGAAGAAATTATATGCAAAACCTTAGTCCAATCTTTTCTCAAGATCAGTCTGACATCGAGGAGACTGGAAATTCTGACCTATCTATGATGCCTTTGAGTACCATTCTGAAAAGTACGAATAACTTTAGTGATGAATATAAATTAGGGAAAGGTGGATTTGGAACTGTGTACAAGGGTGTTTTAGTTGATGGAAGGGAAATTGCGGTTAAAAGGCTTTCAAAAACATCAGTTCAAGGTGTTGAAGAATTAAAAAATGAAATAATATTGATTGCCAAATTACAGCACCGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGACTTCCATCTATTCGATATGGTGAAGGGTGCACGACTAAATTGGAAACAACGATTAAATATTATTAATGGGATTGCGAAAGGGCTTCTATATCTTCATGAAGATTCTAGGCTCAGAGTTATTCATAGAGACCTGAAGGCTAGCAATATCCTGTTAGATCAAGAAATGAATCCAAAAATAGCAGACTTTGGACTGGCGAGAACATTTGGAGGAGACCAGGATGAAGCAAGTACAATTAGAATCGTAGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTATTTTCAGTGAAGTCAGATGTTTTTAGCTTTGGTGTTCTTTTGCTAGAGATCATAAGCGGAAGAAAAAGCAGCAAATTCTATCTTTCAGAAGATGGAACGAGCCTTCTCATATATGCATGGAACCTTTGGCGTGAAAGAAAAGAAATAGAGATGATGGATCCATTGATAGAAAAGACATGTGTACCTGGTGAATATCTGAAGTGTATACATATTGCACTATTATGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCGAGTGTTGTTCACATGCTTGTAAGTGACACACAGACTCTCCCCGGCCCTACACGCCCTGCATTTTCTGTCGGAAGAGCTATCGTTGAACGGGCTGTTGTTGACCGAGGGTCTTCATCAAATACTTCTATCTCTGCCAATGAAGTAACCTTGTCTGAATTGAGTCCTAGATGA 2028 0.3797 MIRKSDCSSRRMFHQWLFTIKFIYLFYSVISQNNSNSQELLDYRYACLDQSSIAPSTTYQTNLNSLISSLSSDSATSNGFGNRTSGNDQNNIVYGQYLCRGDVNKTLCHSCVQNSSRLLKQHCPNNASAILWYPFCLLRYSNQNFFGNLTIRPRIPMFDATQNLTSAGEFDSDARILMNGLIQMGSQTALMFGTHMFNINGTQRRYGWVQCSRDITSEECGTCLSNMLEDVENCCEEKKVWRVFSPSCIMMYETQPFFLNNTGSNAPAPQQAAGNDGTKSWIIIVIVVIGTVVAALLALSAYYLCCLKHRKDRRNYMQNLSPIFSQDQSDIEETGNSDLSMMPLSTILKSTNNFSDEYKLGKGGFGTVYKGVLVDGREIAVKRLSKTSVQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMVKGARLNWKQRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDQEMNPKIADFGLARTFGGDQDEASTIRIVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKSSKFYLSEDGTSLLIYAWNLWRERKEIEMMDPLIEKTCVPGEYLKCIHIALLCVQEDAADRPTMSSVVHMLVSDTQTLPGPTRPAFSVGRAIVERAVVDRGSSSNTSISANEVTLSELSPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07969 675 Gene3D - 156 257 IPR038408 -
Vivi3g07969 675 Gene3D - 41 145 IPR038408 -
Vivi3g07969 675 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07969 675 Gene3D Transferase(Phosphotransferase) domain 1 430 632 - -
Vivi3g07969 675 Gene3D Phosphorylase Kinase; domain 1 318 429 - -
Vivi3g07969 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 50 675 - -
Vivi3g07969 675 FunFam Cysteine-rich receptor-like protein kinase 10 155 257 - -
Vivi3g07969 675 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
Vivi3g07969 675 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 319 429 - -
Vivi3g07969 675 ProSiteProfiles Protein kinase domain profile. 354 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07969 675 CDD STKc_IRAK 360 625 - -
Vivi3g07969 675 SUPERFAMILY Protein kinase-like (PK-like) 340 641 IPR011009 -
Vivi3g07969 675 Pfam Salt stress response/antifungal 52 143 IPR002902 -
Vivi3g07969 675 Pfam Salt stress response/antifungal 162 254 IPR002902 -
Vivi3g07969 675 FunFam Cysteine-rich receptor-like protein kinase 28 43 144 - -
Vivi3g07969 675 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Vivi3g07969 675 ProSiteProfiles Gnk2-homologous domain profile. 41 145 IPR002902 -
Vivi3g07969 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vivi3g07969 675 Pfam Protein tyrosine and serine/threonine kinase 358 625 IPR001245 GO:0004672|GO:0006468
Vivi3g07969 675 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 430 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07969 Vivi-Chr3 217375319 217378455 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07969 45 670 Receptor kinase-like Gene Family AT4G05200 42.146 1.43e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi3g07969 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07969 - - gmx:100798691 1023.85