Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07966 ATGTTGTATCTATGGTTAGTTACCATCAAATTCATATGTTTTTTTCACTTTGCTTACGCAGAACCACTTGATTTTAGATATGCTTGTTTAGATCAATCTTCTAATCCTCCATTTCCCAAATACCAAGCCAACCTCAACAAGTTACTCTCATTACTGTCATCACATGCTGCTGAAAGCAATGGTTTTGGTCACAGAACTTCAGGTCATGATCATACCGATAAGGTTTATGGACTATACTTCTGTCGTGGTGACGCAAACGCCACCATTTGTAACTCGTGCGTTGAAAATTCTAGCGAAATGATAAAACAGGTGTGCCCGAATAACGTTTCTGCTATTTTTTGGTGTCCCTTTTGTCTTCTGAGGTACTCGAATAAGAATTTCTTCGGCAAATTATCTCTATGGCCGAGGATTCCTATGTTTGATGCAACGCAGAATTCTACTGGTGAATTTGATAGTGATGCTAGGATTTTGATGAATGGTTTGATAGAAATGGGATCGGAAGCACCGTTAATGTTTGGTACGCATATGTTTAACATAAACGGTACTCAAAGAAGGTACGGTTGGGTGCAATGTAGCAGAGATATTACTTGCGAACAATGTAGAACTTGTTTGAGCAATATGCTTCAAGAGGTTGAATATTGTTGCGAGGAGAAACGCGTTTGGAGAATTTTTTCGCCTAGTTGCGTTGTTATGTATGAAACTCAGCCATTCCTTCTGAATGGTGTACAGCATGACGCGCTTGCGCCTCAGAAAGCCACAGAAAAGGATGAAGCAAAGTCGTTGACTATAAAAATAATCATTGCTGTGATCGGAGTGGTAGCTGTAGCGCTATTGGCTTTCAGTATATACTATTACAGGCGCTTGGAACGGAAAAAAGAAGAAAAAGAGATGCAGATCCTTGATGCAATGTTCTCTCAAGATCAGACCAACAATGAGGAGAATGTGAACACTGACCTACCGACGATACCTCTGAGTACGATTCTAAAGTGTACCGATAATTTTTCTGATAAATATAAATTGGGGGAAGGTGGATTTGGAGGTGTCTACAAGGGAGTATTAGCAGACGGAAGGGAAATGGCGGTCAAAAGGCTTTCGAAAACTTCGGTTCAAGGAGTGGAGGAATTTAAGAACGAAGTAATGTTGATTGCGAAATTGCAGCATCGTAACCTTGTGAGATTGTTGGCTTGCTGCATTGAGAAAAAGGAGAAGCTGCTTATCTATGAATACTTACCCAATTCAAGCCTCGATGTCCAGCTACGCGATATGGTAAAAGCTGCACTATTGGACTGGAAACGACGATTAAACATTATTAATGGGATTGCTAAAGGGCTTCTGTATCTTCATGAAGACTCTAGACTCAGGGTTATTCATCGAGACTTGAAAGCTAGCAATGTACTGTTAGACCATGAAATGAATCCGAAAATCTCAGACTTTGGACTAGCAAGAACATTTGGAGGAGACCAGGATGAAGAAAATACAATTAGAATCGTAGGAACTTACGGATACATGGCTCCAGAATATGCTATCGAAGGCGTGTTTTCTGTTAAATCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAAAAGGAACAACAAATTCTACCTTTCAGAGCATGGCCAAAGTCTTCTCACATATGCATGGAACTTCTGGAGTGAAAGCAAATGTTTAGAATTGATGGATCCGTCGATAGCAAATTCGTGTGTGCCAAGTGAAGTTTCGAAGTGCATACAGATTGGCTTATTGTGTGTACAAGATAATGCAGCTGATAGACCTACAATGTCGAGTGTTGTTCACATGCTTGGAAGTGACAATGTTACTCTTCCTAGTCCCATATGTTCAGTTTTTTCTGTTGGAAGGTCTACAAACACAGTTGAAGGAGGGGCTTCATCAAATGCTAACGCCCCTGACGCTGTCAATGATGTCAACGATATAACCTTATCCGAATTGATGCCTAGGTGA 1974 0.4048 MLYLWLVTIKFICFFHFAYAEPLDFRYACLDQSSNPPFPKYQANLNKLLSLLSSHAAESNGFGHRTSGHDHTDKVYGLYFCRGDANATICNSCVENSSEMIKQVCPNNVSAIFWCPFCLLRYSNKNFFGKLSLWPRIPMFDATQNSTGEFDSDARILMNGLIEMGSEAPLMFGTHMFNINGTQRRYGWVQCSRDITCEQCRTCLSNMLQEVEYCCEEKRVWRIFSPSCVVMYETQPFLLNGVQHDALAPQKATEKDEAKSLTIKIIIAVIGVVAVALLAFSIYYYRRLERKKEEKEMQILDAMFSQDQTNNEENVNTDLPTIPLSTILKCTDNFSDKYKLGEGGFGGVYKGVLADGREMAVKRLSKTSVQGVEEFKNEVMLIAKLQHRNLVRLLACCIEKKEKLLIYEYLPNSSLDVQLRDMVKAALLDWKRRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARTFGGDQDEENTIRIVGTYGYMAPEYAIEGVFSVKSDVFSFGVLLLEIISGKRNNKFYLSEHGQSLLTYAWNFWSESKCLELMDPSIANSCVPSEVSKCIQIGLLCVQDNAADRPTMSSVVHMLGSDNVTLPSPICSVFSVGRSTNTVEGGASSNANAPDAVNDVNDITLSELMPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07966 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 410 613 - -
Vivi3g07966 657 Gene3D - 140 237 IPR038408 -
Vivi3g07966 657 Gene3D - 24 127 IPR038408 -
Vivi3g07966 657 FunFam Cysteine-rich receptor-like protein kinase 28 25 126 - -
Vivi3g07966 657 ProSiteProfiles Protein kinase domain profile. 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07966 657 Gene3D Phosphorylase Kinase; domain 1 295 409 - -
Vivi3g07966 657 ProSiteProfiles Gnk2-homologous domain profile. 132 237 IPR002902 -
Vivi3g07966 657 SMART serkin_6 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07966 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vivi3g07966 657 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vivi3g07966 657 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Vivi3g07966 657 Pfam Salt stress response/antifungal 145 234 IPR002902 -
Vivi3g07966 657 Pfam Salt stress response/antifungal 34 124 IPR002902 -
Vivi3g07966 657 SUPERFAMILY Protein kinase-like (PK-like) 316 605 IPR011009 -
Vivi3g07966 657 CDD STKc_IRAK 340 605 - -
Vivi3g07966 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 642 - -
Vivi3g07966 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 409 - -
Vivi3g07966 657 Pfam Protein tyrosine and serine/threonine kinase 338 605 IPR001245 GO:0004672|GO:0006468
Vivi3g07966 657 FunFam Cysteine-rich receptor-like protein kinase 10 138 237 - -
Vivi3g07966 657 ProSiteProfiles Gnk2-homologous domain profile. 23 127 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07966 Vivi-Chr3 217356535 217360973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07966 20 657 Receptor kinase-like Gene Family AT4G05200 40.573 4.02e-159 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi3g07966 PK_Tyr_Ser-Thr 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07966 - - gmx:100798691 877.085