Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07962 ATGACATCCGAGTCCTCTAGCATCTCTATCACTTCACAAGATCAAGGTGATTCTTCCCGCTCAAAAACTGTGGTCAACATGGAGGTTGAACAAGATCGATCCTCGAATTCTAATTCCAACAATTTAATCGATTTTGTGAAGCTATCGAAAGACGATTCCGTTCCAGGGTTAAAGGTACAAGAGCATGATTTTTTTAATCTTATACAAGTTGGTTCATCGTCATGTTTACCTAATAATGACATTGAGCAGAAAGATGAGAACAATAGCGAAGAGAAGAGTTCTGATCTGAGGTCTTTCTCATGCTCCTTTTGCAAGAGAAAATTTTCGACTTCTCAAGCATTAGGAGGACATCAGAATGCTCATAAGGCAGAACGCGCTTTAGAAAAACAGCGTAAACAAAGGTACGATGGTGGTGCTTTAGGTTTAGGGCAATCTCACTATAGCCCTTATTTTAGCTATTCTAGTAATCTTTTTACACCTTATAATTGTAACTATAGACTTGGGGTTAGAATGGATTCAACCATTCAAAAACCACCTTATTTTAGCCCTAGGACAACCCCACATAGTTTTGGTTATAGCAATGGTGCTTTGAGTTTCCAAGATATGTTAAACCCTTCTCTTGTGTCATTGAGAAATATGGGAGGTGGGAATAGTGGAATTGGAACCCTAGGTATTGGGGGTGCAAGTAATATAAAAATTGAAGATGGTGGTGCAAAGGATAAATTTAGTGCTCTTTTGAAATTTGGAGATTCTTCTACAAATGTGGCTACAAGTTCAAACTCAAACATAGAAAAGAAAATCAATGTGGCTTCTACTTCTATCAAAGATGAAATCAATGTGGCTTCTACTTCTATCAAAGATGAAATTAATGATCGATCAAAGTCCAATGTTGAAGAAGAACCATCCAATTCTGAATCTTCTGAACTTGATTTGTCACTTAAGCTTTAA 948 0.3703 MTSESSSISITSQDQGDSSRSKTVVNMEVEQDRSSNSNSNNLIDFVKLSKDDSVPGLKVQEHDFFNLIQVGSSSCLPNNDIEQKDENNSEEKSSDLRSFSCSFCKRKFSTSQALGGHQNAHKAERALEKQRKQRYDGGALGLGQSHYSPYFSYSSNLFTPYNCNYRLGVRMDSTIQKPPYFSPRTTPHSFGYSNGALSFQDMLNPSLVSLRNMGGGNSGIGTLGIGGASNIKIEDGGAKDKFSALLKFGDSSTNVATSSNSNIEKKINVASTSIKDEINVASTSIKDEINDRSKSNVEEEPSNSESSELDLSLKL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07962 315 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Vivi3g07962 315 Gene3D Classic Zinc Finger 77 139 - -
Vivi3g07962 315 MobiDBLite consensus disorder prediction 289 315 - -
Vivi3g07962 315 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 315 IPR044246 GO:0009788
Vivi3g07962 315 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Vivi3g07962 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Vivi3g07962 315 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07962 Vivi-Chr3 217303723 217304670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07962 91 186 C2H2 Transcription Factor Family AT1G80730 43.269 7.22e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g07962 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07962 - - psat:127081686 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g07962 3 217303723 217304670 Vivi3g07962 3 217303723 217304670 ECH