Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07961 ATGAAGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGGATAAAGAAGATAATGCAAGCGGACGAGGATGTTGGAAAGATAGCACTGGCAGTTCCTGTTTTAGTTTCAAAAGCTCTGGAATTATTCCTACAAGATCTTTGCGACCGCACCTATGAAATAACTCTACAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGCTACAACGTCTTCGACTTTTTGAGAGACATCGTCAGCAGGGTTCCTGACTATGGGCACGGCCATGGCCATCCTGAGACTGGAGCCGATGACCGCACTCTTCCCAAGAGAAGGAAACCTGCTGCAGACGATTGCAATGACAGTGATGAAGAGACTAAGCGGAGTAAGATGCTAGAGTTGGGCCACACCGGCGGTACTGGTAGGGGAAGAGGGAGAGGTAGAGGAAGAGGCCGTGGCCGAGGAGCACGCACCGCAGAGAAAGAGACCTTACATCAGCAGGTTGAGTCTGAACCTTGCACCTCTATTCAACAAAGTAGCAAAGAAGCCTCTAATACAAACATGGCAATCGATATCGGTCCAGAACCAAAGGAGTTATCAAAGGAAAACATTTCACCTCACGAGGAAAGCACTCGATCGTTCCGAAACATCGATTTGAATGCCAATATACAAGAAAACGAGGACAAAGACAATATAAGCACGGCTACTCCACAGGCCTCATTGCCTGAACCTGCTGCAGTAATGGATATGCAACATGAAGAAATTCCAGGTTGGTCTCTTGCTGATGTCGACAAGATGGCGATCGATACGTTACAGCTTGCGGCGAATCTTGGTAATAGACTAGATGAGGAGGAGGAAGATTATGATGAGGAGGAAGGGTAA 876 0.4703 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHPETGADDRTLPKRRKPAADDCNDSDEETKRSKMLELGHTGGTGRGRGRGRGRGRGRGARTAEKETLHQQVESEPCTSIQQSSKEASNTNMAIDIGPEPKELSKENISPHEESTRSFRNIDLNANIQENEDKDNISTATPQASLPEPAAVMDMQHEEIPGWSLADVDKMAIDTLQLAANLGNRLDEEEEDYDEEEG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07961 291 MobiDBLite consensus disorder prediction 166 185 - -
Vivi3g07961 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vivi3g07961 291 Coils Coil 272 291 - -
Vivi3g07961 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 124 - -
Vivi3g07961 291 MobiDBLite consensus disorder prediction 151 165 - -
Vivi3g07961 291 MobiDBLite consensus disorder prediction 193 212 - -
Vivi3g07961 291 MobiDBLite consensus disorder prediction 91 130 - -
Vivi3g07961 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vivi3g07961 291 FunFam dr1-associated corepressor homolog 1 86 - -
Vivi3g07961 291 MobiDBLite consensus disorder prediction 91 214 - -
Vivi3g07961 291 SUPERFAMILY Histone-fold 3 97 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07961 Vivi-Chr3 217293776 217296574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07961 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.027 1.49e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi3g07961 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07961 K21752 - gmx:100810093 401.749