Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07946 ATGAAGCCTGATTTTTTCTTGTTACCTATGTCCTGTTATGTATACATTCATTTCTTCACCTTAACCTTAGTGTGGTTTGGTCCAAACAGAACTATGGCATTAGAATTAGGAAACCAAACAGACCATTTGGCTCTGCTCCAATTCAAGAAATTAATATCTAGTGATCCATATGGTAACCTAGGTTCTTGGAATAATTCAAACCACTTTTGCAAATGGCACGGAATCACATGTAGTCCCATGCGTCAAAGAGTTACAAGGTTGACGTTGCGAGGATCCAAATTGCATGGATCCATTTCTCCATGTATTGGAAATCTGTCTCATCTGAGATACCTCAATCTTGGAAACAACGTCTTCTATGGAAACATTCCACAAGAACTTGGTTGTTTGTCAAGATTAAGGTATCTAATTTTACTCAACAACTCGTTTGTCGGAGAGTTTCCTATAAACTTGACAAAGTGCTCTGAGCTTAAAAGCGTATATTTAGCAGGAAATAATCTTATTGGCAAAATACCTAGCCAAATTGGCTCTCTTCAAAAGCTTCAAAGTTTCTACGTGGGAAGAAACAATTTATCTGGAAAAATACCTTCATCCATAAGGAATCTTACATCCCTTTCTATTTTTTCGATCAGTTTCAATAACTTGGAGGGAAATTTTCCACATGAAATGTGCTTCCTAAAAAAGTTGAAGGCTATAGCCGTGCAGGTCAACAAATTGTCTGGTACATTTCTTTCCTGTCTTTATAATATGTCATCTCTTAAAGTGATTTCAACTGCAGCCAATGAATTTAATGGTTCTCTTCCACCCAATTTGTTCCACACTCTCCCCAATCTCCGATATTTTGCAATCGGAGGAAATCAATTCTCAGGTCCAATCCCTACTTCCATTGCAAATGCTTCTATTTTGGCAATATTTGATATAAGTCAAAACCATTTTGTTGGACAAGTTCCAAGTCTAGGGAAGCTACAAAGTCTTTTGGAGATATATATGGCTGCAAACAATCTAGGTTACAATTCAACTAAGGATTTAGAGTTTTTAAAATCGTTGACAAACTGTAGTAAGTTGCAATCGATCACATTATTCGGAAATAATTTTGGAGGAAGTTTGCCAAGTTCTGTTGGCAATCTATCCACCACAATTAGTCAACTAAATTTAGGGAGCAATCAAATACACGGAAAAATTCCTACCGAATTAGGAAATCTAATTAACTTGAGTCTCTTGAACATGATAGATAACCTCTTGGAAGGAACAATTCCAACTACTTTTGGGAAGTTTCAAATGATGCAAAAGTTAATATTGGTTGGAAACAGATTATCAGGGAATATACCATTCTTCATAGGTAACCTCACTCAATTGTATGGTTTGGGACTAGATGAAAATATGTTAGAAGGGAACATTCCTCCAAATATTGGAAATTGTCGAAATCTACAATACCTAGGCTTTGCACAAAACAACCTTAGAGGAGTCATACCCTCGGAGATTTTAAGTATTTCGTCTTTAACAAATTTTTTAGACTTGTCACAGAACTCATTGAGTGGTAGTTTGCCAAAAGAAGTCGGTACTCTAAAGAATATCAATTGGTTAGATGTCTCTGAGAATCATTTGTCAGGGGTCATTCCAGAAACCATTGGTGAATGCATAAGCTTAGAATATCTTAATTTGAAAGGGAACTCCTTCGAAGGAATCATACCGTCCTCATTGGCATCTCTCAAAGGTCTTGAAAAATTAGATTTGTCTCGAAATCACTTGTCTGGTCCAATTCCAAAAGTTTTGCAGAATCTTTCTATTCTCGAGTACTTCAATGTTTCTTTCAACATGTTGGAAGGCGAGGTACCAATTGAAGGTGTCTTTCGAAATGCAAGTGGTATAGTAGTGATCGGTAACAATAAGCTCTGTGGAGGTATTTCAAAGCTACATCTACCGCCGTGCCCTGTCAAGAGTACGAAACCTGCAAAAAACCATAAGTTTGTGTTGAAGGTTGTGATTGTTAGTGTGGTTGTTTTTATTCTATTGTTGGCATTTATTACAATTGTCTATTGGATAAGAAAAAGAAACAAGAAACAATCTTCAGATTCACCAACAATTGACCAACTAGCTAAGATTTCATACAAAGACCTTCATCAAGGAACCGACGGGTTCTCAGATAGAAACCTCATTGGATCAGGAAGTTTTGGTTCTGTGTATAAAGGACGTCTTGTGTCAAAGGATAAAGATGTTGCGGTAAAGGTCGTGACGCTACAAAAGAAGGAAGCTCAAAAGAGTTTTATTGCCGAATGTAATGCACTAAAAGGTATACGACATCGAAATCTTGTTAAGATTCTAACATGTTGTTCTAGTATTGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTCGATTACATGACAAATGGAAGCTTAGAAGAATGGTTGCACCCAAAGACCGAGAATGTAGAGCTTTTGAAAACATTAGATTTTCGTCAAAGGTTGAATATGATTATCGATGTTGCTTCTGCATTACATTATCTTCATCGTGAATGTGAGCAAATGATCGTTCATTGTGATCTAAAGCCAAGCAATATCCTTCTTGACGATGACATGGTTGCACATGTGAGCGATTTTGGAATAGCAAGACTTGTCTCTTCCACTGATGTTACCTCTCGTGAAGAAACTAGTACAATCGGAATAAAAGGGACTATTGGATATACTCCTCCAGAGTATGTAATGGATTCTAAAGTTTCTACATCCGGCGACATGTATAGCTTTGGGATAGTTATATTGGAAATGCTTACCGGAAAAAGACCAACAGATGAAATGTTTCGAGACAGTCAAAATATGCATAACTTTGTTGCAACTTCATTTCCTGATAATTTAGCACAAATTTTGGACAAACACATTGTTCCAAGAGATGAAGAAGCAACAATAGAAGATAGAAACAATCATCAACTTATGCTAACTGTGGAGAAGTTAGTAGTTTCACTTATTCGAATTGGACTTGCTTGTTCAATGGAATCTCCAAATGAAAGAATGAATATAGAAGATGTTACTAGAGAGCTAAACATAATCAGAAAGGACAATAGAAGCACTTAA 3066 0.3637 MKPDFFLLPMSCYVYIHFFTLTLVWFGPNRTMALELGNQTDHLALLQFKKLISSDPYGNLGSWNNSNHFCKWHGITCSPMRQRVTRLTLRGSKLHGSISPCIGNLSHLRYLNLGNNVFYGNIPQELGCLSRLRYLILLNNSFVGEFPINLTKCSELKSVYLAGNNLIGKIPSQIGSLQKLQSFYVGRNNLSGKIPSSIRNLTSLSIFSISFNNLEGNFPHEMCFLKKLKAIAVQVNKLSGTFLSCLYNMSSLKVISTAANEFNGSLPPNLFHTLPNLRYFAIGGNQFSGPIPTSIANASILAIFDISQNHFVGQVPSLGKLQSLLEIYMAANNLGYNSTKDLEFLKSLTNCSKLQSITLFGNNFGGSLPSSVGNLSTTISQLNLGSNQIHGKIPTELGNLINLSLLNMIDNLLEGTIPTTFGKFQMMQKLILVGNRLSGNIPFFIGNLTQLYGLGLDENMLEGNIPPNIGNCRNLQYLGFAQNNLRGVIPSEILSISSLTNFLDLSQNSLSGSLPKEVGTLKNINWLDVSENHLSGVIPETIGECISLEYLNLKGNSFEGIIPSSLASLKGLEKLDLSRNHLSGPIPKVLQNLSILEYFNVSFNMLEGEVPIEGVFRNASGIVVIGNNKLCGGISKLHLPPCPVKSTKPAKNHKFVLKVVIVSVVVFILLLAFITIVYWIRKRNKKQSSDSPTIDQLAKISYKDLHQGTDGFSDRNLIGSGSFGSVYKGRLVSKDKDVAVKVVTLQKKEAQKSFIAECNALKGIRHRNLVKILTCCSSIDYKGQEFKALVFDYMTNGSLEEWLHPKTENVELLKTLDFRQRLNMIIDVASALHYLHRECEQMIVHCDLKPSNILLDDDMVAHVSDFGIARLVSSTDVTSREETSTIGIKGTIGYTPPEYVMDSKVSTSGDMYSFGIVILEMLTGKRPTDEMFRDSQNMHNFVATSFPDNLAQILDKHIVPRDEEATIEDRNNHQLMLTVEKLVVSLIRIGLACSMESPNERMNIEDVTRELNIIRKDNRST 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07946 1021 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 342 - -
Vivi3g07946 1021 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Vivi3g07946 1021 Gene3D Phosphorylase Kinase; domain 1 693 793 - -
Vivi3g07946 1021 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Vivi3g07946 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Vivi3g07946 1021 SUPERFAMILY L domain-like 378 632 - -
Vivi3g07946 1021 PANTHER OS04G0122200 PROTEIN 225 1015 - -
Vivi3g07946 1021 ProSiteProfiles Protein kinase domain profile. 712 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07946 1021 SUPERFAMILY Protein kinase-like (PK-like) 685 1012 IPR011009 -
Vivi3g07946 1021 SUPERFAMILY L domain-like 39 334 - -
Vivi3g07946 1021 CDD STKc_IRAK 718 1014 - -
Vivi3g07946 1021 Gene3D Ribonuclease Inhibitor 346 650 IPR032675 -
Vivi3g07946 1021 Gene3D Ribonuclease Inhibitor 200 345 IPR032675 -
Vivi3g07946 1021 SMART serkin_6 712 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07946 1021 FunFam LRR receptor-like serine/threonine-protein kinase EFR 682 793 - -
Vivi3g07946 1021 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 648 - -
Vivi3g07946 1021 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Vivi3g07946 1021 Gene3D Ribonuclease Inhibitor 38 197 IPR032675 -
Vivi3g07946 1021 Gene3D Transferase(Phosphotransferase) domain 1 794 1021 - -
Vivi3g07946 1021 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1021 - -
Vivi3g07946 1021 Pfam Protein kinase domain 714 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07946 Vivi-Chr3 217077708 217081224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07946 38 1016 Receptor kinase-like Gene Family AT3G47570 45.665 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi3g07946 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07946 - - aprc:113870110 1288.48