Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07945 ATGATATATATTGTGGCTTGTGGCTGGGAGCTATTTTTTCTCTCCGAGTTTGGGGCACGTCCTCTCGGTGGTGGGACGGAATATTACAGAGGTTTTCATCAAAGAATTAGGCCAACCCAAATGGGGTTTTCCTTAAACATAGATGTAGCTTCAAGAGCTTTTTATGAACCAATTCTTGTCACTGAATTTATTTCCAAACATTTTAATTTGGATTTGTCAAGGCCAAGGGCACTGTCTGATCAAGATCGAGTAAAGATTGAGAAAGTCTTGAAAGGTGTTAAGGTAAAACTATCTATCTCTTGGTGGGGAAATAAGGAGGTGCAAGGTGACCGGTCTCTCAAGAGAGCCGCTTGGAGTCCTAACATAAACCAACAATAA 378 0.4101 MIYIVACGWELFFLSEFGARPLGGGTEYYRGFHQRIRPTQMGFSLNIDVASRAFYEPILVTEFISKHFNLDLSRPRALSDQDRVKIEKVLKGVKVKLSISWWGNKEVQGDRSLKRAAWSPNINQQ 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07945 125 Gene3D paz domain 52 121 - -
Vivi3g07945 125 Pfam Argonaute linker 1 domain 12 56 IPR014811 -
Vivi3g07945 125 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 17 99 - -
Vivi3g07945 125 SMART DUF1785_2 5 57 IPR014811 -
Vivi3g07945 125 SUPERFAMILY PAZ domain 22 108 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07945 Vivi-Chr3 217039455 217043279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07945 12 98 Eukaryotic Initiation Factors Gene Family AT1G48410 52.273 1.91e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07945 K11593 - vvo:131593579 251.136