LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g07940	ATGGCAACAACAAAACTCATACTCATCTTCATAACCCTTTTCACAAAATCAATAGCTCAATCTCCAAACTATGTAGGAGATGATTGTAAAAACTCAACAGAACAATCTCTTACAACTACATACAAATCAAATCTTAAAAAAGTGCTATCATTGTTATCCTCGGATGCTATTGTGAGCAAAGGATATAATCATACAAGCATAGGAGGGAACACAGTTGATGGTGTGTATGGTCTCTATGATTGTAGGGGTGATGTCACTGGTTCTTTTTGTCAATTTTGTGTCTCTACTGCTGCCTCAGTTATTCTTCAACAATGTCCTAATAGAGCCTCAGCTGTTATATGGTACAATTTTTGCATTCTCAGGTATTCAAACCATAATTTCTTTGGGAAGCTAACAACAACACCTTCATGGGATATTTTGGGGACAAAAGATATCACTAATCCACAAGAAGTTGATAAAGGTGAAGATAACATGCAAAGTTTAATAAAAGAAGCTACTATGGAGAATGGTAAATTGTATGCAATGAGAGAGTTCAATTTGAGTAATGAGAAAAGGTATGGGTTGGTGCAATGTAGTAGGGACCTTAGTGAAGTTGAGTGTAGTGAATGTTTGGAGGCTATGTTGGAGAAAGTTCCTAAATGTTGTGGGACAAAGATTGGTTGGCAAGTTCTTGCTCCAAGTTGTTTGATTAAGTATGATGATTTTATCTTCTATCAACTTATTTCTCAAACTTCTTCTCCTTTGCATGATTCAGGTGAGCAAGGAGGTTCAAGTAAGCATAATACGTTAATCATCACCATTGTCATTGTGTTGGTGGTTGCACTTGCTCTCATGAGTTTCTGTATCTACTTCATATGGAGAAAATATCATTCAAATAAAGATGGACTGGTGCCAAAGACAATTACTACATCTCATCATGATGATATTCAAAGAGAGGAATCCTTACATGGTGACCTCCCAATAATCCCTTTAATTTGGATTCGACAAAGTACTAATAATTTTTCACAGTTATGCAAATTAGGAGAAGGTGGTTTTGGCCCTGTTTACAAGGGTAATTTAGTAGATGGCACAGAAGTTGCAATTAAAAGGCTCTCTACAACATCTGGTCAAGGTTCAAAAGAGTTTAAGAATGAAGTAATCTTTATTGCTAAATTGCAACATAGAAACCTTGTGAGACTCTTGGGATGCTGCATTGAGGATAATGAGAAGTTGCTTGTATATGAATACATGCCAAATTCAAGCCTTGACTTTCATCTATTTGATGGAGAAAAAAGAAAAGTTCTAGATTGGAAGTTAAGAATGAACATTATTAATGGAATTGCAAAAGGACTCTTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACCTAAAAGCTAGTAATGTTCTTTTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTAGCTAGGTCATTTGAAAAAGACCAAAGTCAAGAAAATACAAGAAGAGTGGTGGGCACCTATGGATACATGTCGCCAGAATATGCTATGGAAGGATTATATTCTGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATAGTTTGTGGAAAAAGAAACGGTGGATTTTATCTTGCAGAACATGGTCAAAGTCTTCTAATATATAGTTGGAATCTTTGGTGTGAAGGAAAAAGTTTGGAACTTTTAGATCCAATACTAAAAGAGACATACATAGAAAATGAAGTCATGAAGTGTGTACATATTGGTTTATTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCCAATGTTGTTGTCATGTTGGCAAGTGACACAATGGCACTTCCCACTCCTAATCAACCAGCATTTTCAGTTGGAAGAAAAGCAGTTGAAGATGAATCAACATCAAAAGCTTCCAATAATCTTTCTATAAATGAAGTTACAATATCAAATGTTTTTCCTAGATAG	1959	0.3517	MATTKLILIFITLFTKSIAQSPNYVGDDCKNSTEQSLTTTYKSNLKKVLSLLSSDAIVSKGYNHTSIGGNTVDGVYGLYDCRGDVTGSFCQFCVSTAASVILQQCPNRASAVIWYNFCILRYSNHNFFGKLTTTPSWDILGTKDITNPQEVDKGEDNMQSLIKEATMENGKLYAMREFNLSNEKRYGLVQCSRDLSEVECSECLEAMLEKVPKCCGTKIGWQVLAPSCLIKYDDFIFYQLISQTSSPLHDSGEQGGSSKHNTLIITIVIVLVVALALMSFCIYFIWRKYHSNKDGLVPKTITTSHHDDIQREESLHGDLPIIPLIWIRQSTNNFSQLCKLGEGGFGPVYKGNLVDGTEVAIKRLSTTSGQGSKEFKNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFDGEKRKVLDWKLRMNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARSFEKDQSQENTRRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIVCGKRNGGFYLAEHGQSLLIYSWNLWCEGKSLELLDPILKETYIENEVMKCVHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPTPNQPAFSVGRKAVEDESTSKASNNLSINEVTISNVFPR	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g07940	652	Gene3D	-	136	237	IPR038408	-
	Vivi3g07940	652	Gene3D	-	23	127	IPR038408	-
	Vivi3g07940	652	Pfam	Domain of unknown function (DUF3403)	607	652	IPR021820	GO:0004674
	Vivi3g07940	652	ProSiteProfiles	Protein kinase domain profile.	334	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g07940	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Vivi3g07940	652	Pfam	Protein tyrosine and serine/threonine kinase	338	603	IPR001245	GO:0004672\|GO:0006468
	Vivi3g07940	652	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	39	648	-	-
	Vivi3g07940	652	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	299	409	-	-
	Vivi3g07940	652	FunFam	Liguleless narrow1	410	613	-	-
	Vivi3g07940	652	ProSiteProfiles	Gnk2-homologous domain profile.	133	237	IPR002902	-
	Vivi3g07940	652	SMART	serkin_6	334	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g07940	652	SUPERFAMILY	Protein kinase-like (PK-like)	318	630	IPR011009	-
	Vivi3g07940	652	FunFam	Cysteine-rich receptor-like protein kinase 28	25	126	-	-
	Vivi3g07940	652	CDD	STKc_IRAK	340	605	-	-
	Vivi3g07940	652	Pfam	Salt stress response/antifungal	29	124	IPR002902	-
	Vivi3g07940	652	Pfam	Salt stress response/antifungal	157	233	IPR002902	-
	Vivi3g07940	652	Gene3D	Transferase(Phosphotransferase) domain 1	410	614	-	-
	Vivi3g07940	652	Gene3D	Phosphorylase Kinase; domain 1	297	409	-	-
	Vivi3g07940	652	ProSiteProfiles	Gnk2-homologous domain profile.	23	127	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g07940	Vivi-Chr3	216994674	217014645	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g07940	2	652	Receptor kinase-like Gene Family	AT4G05200	42.059	0.0	539

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi3g07940		PK_Tyr_Ser-Thr	4.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g07940	-		-	mtr:25490357	986.097