Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07929 ATGAGTACAGAAAGTCAAACAATAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAGGCAATAGAAAAGGTCCTCAAAAAGCTAGCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGCCATTCTTAACTGGTTTAGCAGTCCTATGGGATACATGGTCACAGTTGATTCGAGTTATTTTGTTTCAACGAACAAGAAAATTATTGAAGAAAACTTTAGCAAGAGAAAGAATGACTATCCGATGAATCGGTATATCAACAAGCTCTCTAAGTATTGTCAAATCAATAAGATTGAATTCCAACTAGAAGTGCATGCAGGACCAGCTCCTCAGGTGATTTCTGAGGCTGCAACTAAATTTCAACCTACAACTTTGATACTTGATAGGTATATCCACAGAAACATGAAGAATTTCATGGACAGGATCCCTTGTGGTATGTATAGGATAACAAGCGATAACTCCATTGAAAAGCTGAAAGATCCGAAATCATTAGCTTCGAAATTTTCTGAAAGGCAAGAAAATGTAAGCTATTCAGAAATGATACCGGGAAGTGAAGACGATGGAGTTTCTCTTCAGATGTCCAAGTCTTCGTCTACCGATCTTTTCACGTCCGGAGTTTCAAGTACCGATAATGCATCTACTTCTGGCGTTGGAAGTTCAGAATACGTCCTTCAGAAATACCAAATGGGAGAGTTTCTTGCGGAGCAAGAAAAACAAGAGAGACGATCACTATTTCATATATGTGAAAATCAAGAATCGAACGGAACAGAAGTAAATCAAAAGGAGATACAAATTGAGAATGCAGCATATAATATGGAGGAGGAGTTCACAAATCCAGCTTGTTCGGTATGCAACAATAAAAGACTGAAAATCGGATCGAAAAGAGACTTCAGTTACTTGGAGCTCTACGCTGCTACGCAGGGATTTTCTGCTAAGAACTTTCTGTCGGAAGGTGGGTTTGGATCGGTCTACAAAGGACAACTAAACGGAATGACAATTGCGGTTAAGCAACATAAAAGTGCAAGCTTTCAAGGAGAGAAGGAGTTTAGGTCTGAAGTCAATGTACTTAGAAGAGCAAGACATGAAAATGTGGTCATGCTTTTAGGTTCATGTTCAGAAGGGAATAATAGGCTTCTTGTTTATGAATATGTCTGCAATGGCTCACTTGATCAACATCTCTCCGAACACTCAAGATCGCCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCGGCCAAAGGCTTACTATACTTGCACAAAAATAACATCATACACAGAGATGTCAGACCAAATAATATTCTTGTAACACATGATCATCAACCATTGATAGGAGATTTTGGACTAGCAAGAACTCACAACAAAGATTTGACACACTCGACGGAAGTTGTTGGTACCTGGGGTTATTTGGCACCAGAATATGCCGAATATGGCAAAGTGTCGAGTAGAACCGATGTATATTCTTTTGGAGTGGTTCTACTACAGCTTATCACTGGAATGAGAACTACAGACAAAAGACTTGGAGGAAGAAGCCTCGTCGGATGGGCAAGGCCACTTTTAAGAGAAAGAAATTATCCAGATCTAATTGATGAAAGGATCATTGATAGCCATGATTACCATCAATTATTTTGGATGATAAGACTAGCTGAGAAATGTCTAAGCAAGGATCCTAAGAAAAGGCTAAGTATGGTTGCGATTGTTAATGCATTGAGTGACATTTCGGAAGGAAACACGTGTGACATTGGAACGGGAGATTACTCGCCTGCAAGGTCAGATTCATCTTATAGTGAATCAGAATTCGATGAAAATGAAGATATTATACACGGAAACTTTGAGGAGGACAGCGAGTTACTAAGCACGATTTCAGAATCCATAGAAGGAAATGATACCATTAGTCAGATGAGACATATGAGTGTGAGGCAGCCACCATCTCCTCCGATTAAAAGCATGTGTTCGAGCGGCTCAAACTCGTTTCAGTTTTCGGATGAATCGTATAGTGATTACGAAGCACATTGTGAAAGGGATGCAGAAATGGTAACATACAGAATTGGTTTACTCAACAACTCTTAG 2076 0.394 MSTESQTIVVIQDASRDVGLKAIEKVLKKLAVKAGDQLIIVAILNWFSSPMGYMVTVDSSYFVSTNKKIIEENFSKRKNDYPMNRYINKLSKYCQINKIEFQLEVHAGPAPQVISEAATKFQPTTLILDRYIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSLASKFSERQENVSYSEMIPGSEDDGVSLQMSKSSSTDLFTSGVSSTDNASTSGVGSSEYVLQKYQMGEFLAEQEKQERRSLFHICENQESNGTEVNQKEIQIENAAYNMEEEFTNPACSVCNNKRLKIGSKRDFSYLELYAATQGFSAKNFLSEGGFGSVYKGQLNGMTIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRSPLTWEDRIKVAIGAAKGLLYLHKNNIIHRDVRPNNILVTHDHQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRERNYPDLIDERIIDSHDYHQLFWMIRLAEKCLSKDPKKRLSMVAIVNALSDISEGNTCDIGTGDYSPARSDSSYSESEFDENEDIIHGNFEEDSELLSTISESIEGNDTISQMRHMSVRQPPSPPIKSMCSSGSNSFQFSDESYSDYEAHCERDAEMVTYRIGLLNNS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07929 691 PANTHER OS01G0253100 PROTEIN 198 576 - -
Vivi3g07929 691 SUPERFAMILY Protein kinase-like (PK-like) 293 572 IPR011009 -
Vivi3g07929 691 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672|GO:0006468
Vivi3g07929 691 Gene3D Phosphorylase Kinase; domain 1 281 384 - -
Vivi3g07929 691 ProSiteProfiles Protein kinase domain profile. 310 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07929 691 SMART tyrkin_6 310 572 IPR020635 GO:0004713|GO:0006468
Vivi3g07929 691 Gene3D Transferase(Phosphotransferase) domain 1 385 585 - -
Vivi3g07929 691 Pfam Protein tyrosine and serine/threonine kinase 313 572 IPR001245 GO:0004672|GO:0006468
Vivi3g07929 691 FunFam Proline-rich receptor-like protein kinase PERK8 272 384 - -
Vivi3g07929 691 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 385 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07929 Vivi-Chr3 216877177 216880893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07929 298 587 Trihelix Transcription Factor Family AT1G70460 47.176 5.28e-80 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi3g07929 PK_Tyr_Ser-Thr 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07929 - - gmx:100794450 882.478