Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07928 ATGTCTCATTCTCACAATCAAACAGTTGAACAATTTCCATTGAAATCCATTTGCTTAATGTGCTACAACAATAGACCAAAACTTGATTGGCCAATAAGAGACTTCACATATGCTGAGTTGCATGCAGCCACACAAGGCTTTTCCATAAAGAATTTTTTATCAGAAGGTGGATTTGGTTCTGTCTACAAAGGAGAGATTCTTGGACAGAAGATTGCTGTTAAGCAATGCATTCATGCGAATCACAAACAAGAGAAGGAGTTTAAGTCCGAAGTCGATGCATTAACAAAAGCAAGACATGAGAATGTTGTCATGTTTCTCGGATCTTGTTCGGAAGGAAATAATAGGTTTCTTGTTTACGAATTCGTCTGCAACGGCTCACTCGATCAACATTTATCACAATATTCTCGGAAACCTCTTTGTTGGCAAGATAGGGTGAAAGTTGCGAATGGAGCTGCCAAAGGCTTGTTATACCTTCATCAGAATAACATCATACATAGAGATATAAAACCAAACAACATACTTCTTACACATGATTGTGAAGTTTTGCTAGGTGATTTTGGTTTGGCTAAAATTGTAAGTGAAGAATTCTCATGTTCAATAGAATGTCCTGGAAATTTGGCATATTGGGCACCAGAATATGCAGCATTTGGTAAAGTATCAAATAAAACAGATGTGTATTCCTTCGGAGTGGTTCTAGTTGAACTTATAACTGGAATGAAGACTACAGACAAAAGACTTGGTGGAAAGAATCTAGTGGGATGGGCTAGACCATTACTAAGACAAGGGAACTGTCAAAAACTTGTTGATGGAAGGATAATGGATTCACATGACTGTCATCAACTTTTCTGGTTGAGTCGTCTAGCCGGAAATTGTCTGAACAAAGATCCTCAGAAACGATTGGATATGAACACAGTGGTCAAAGCCTTAACACATATAGAGGAAGGTTGCAGTGGCTGCATAGTGGGAAAAGACAGTATTGCTATGTCAAGCTATTCTAAATCAAAAGATGATATGCAGGACTCTACAGAAGCAGATGATGAAAGTGGAAATATTGGAAGCAGTTCCATCACTGCAAATTGCAAAAACCTCAAATTATAA 1098 0.3789 MSHSHNQTVEQFPLKSICLMCYNNRPKLDWPIRDFTYAELHAATQGFSIKNFLSEGGFGSVYKGEILGQKIAVKQCIHANHKQEKEFKSEVDALTKARHENVVMFLGSCSEGNNRFLVYEFVCNGSLDQHLSQYSRKPLCWQDRVKVANGAAKGLLYLHQNNIIHRDIKPNNILLTHDCEVLLGDFGLAKIVSEEFSCSIECPGNLAYWAPEYAAFGKVSNKTDVYSFGVVLVELITGMKTTDKRLGGKNLVGWARPLLRQGNCQKLVDGRIMDSHDCHQLFWLSRLAGNCLNKDPQKRLDMNTVVKALTHIEEGCSGCIVGKDSIAMSSYSKSKDDMQDSTEADDESGNIGSSSITANCKNLKL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07928 365 SMART serkin_6 47 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07928 365 MobiDBLite consensus disorder prediction 332 353 - -
Vivi3g07928 365 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Vivi3g07928 365 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g07928 365 Gene3D Transferase(Phosphotransferase) domain 1 122 321 - -
Vivi3g07928 365 FunFam Proline-rich receptor-like protein kinase PERK8 8 121 - -
Vivi3g07928 365 SUPERFAMILY Protein kinase-like (PK-like) 29 310 IPR011009 -
Vivi3g07928 365 Pfam Protein tyrosine and serine/threonine kinase 49 309 IPR001245 GO:0004672|GO:0006468
Vivi3g07928 365 PANTHER OS01G0253100 PROTEIN 24 313 - -
Vivi3g07928 365 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 122 325 - -
Vivi3g07928 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07928 Vivi-Chr3 216870697 216872258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07928 35 316 Trihelix Transcription Factor Family AT5G38560 44.407 1.85e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi3g07928 PK_Tyr_Ser-Thr 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07928 - - vvo:131659948 756.133