Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07927 ATGAGTCGTGTGAAAAAGGAGAATGAAGATGATATGCGCTGCAATGATCAATCACAGTCGCGGTTGAATGGTGAGGGTAACAGGGGAAGTGTTGGTGTTGGTGGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACAGTTGCAGAAGATACTATTTTGATTGAATATGTCCAGAAGCATGGCGAGGGGAACTGGAATGCTGTTCAGAAGCATTCGGGCCTGTTTCGATGTGGAAAAAGCTGCCGACTGAGATGGGCGAATCACTTAAGGCCAAATTTAAAGAAAGGGTCATTTACTGCAGATGAGGAGCAGTTGATTGCTCAACTCCATTTAGAAATGGGAAACAGATGGGCACGTATGGCAGCGCACTTACCTGGTCGTACGGATAACGAAATAAAGAACTACTGGAATACCAGGACCAAGAGGCGTAATCGGGCTGGCTTGCCACTTTATCCTCCAGAAGTGCGAAAAAAGCAAGGGAGTCAACGTGGCCAAGACACTGTTGGAATCGATAATGGTGATAGAGGGCATCATGGTTTCTTGCCGAAAAACAACTATGAGATGCATGATGTAATGTTTGAAAATTTGAAAGAAAATCAAGGAATTTTGCCTATTACAGCTGTGCCTGAGAATCCTGATATTTCTGCAAATAGCATTCTGCTAAACAGTCTTGATTCTCCTCCATATTGTAATTCTGTGCCATCAACACTACCTAACCATCACCATCTTCGAGAATCAACGATGTCTTTTCTTGGTTCAAGTGGAACGAACAAGAATTGGTTTTATCCACTTTACCATGTTCAGGATCATAGTTCTGATAAGATTGTACAATCATTCGGTTTGCATTCTCCGCTTGATCCTGGTTTCTCCTCACATAACTCAATGTATTACCGCCATTCCTTATCAAATGGCAATTCCTCCACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGAAGTACTTTTCCCTCACCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCTAGAGTCCGGTTGTTCTTCCCCACGTAATAGTGGGACACTCGAGGACATAATTTATCAGAAGAAGACTCTTCCAAATTCAATGAACAACTGTTCTGACAAGAGTTCACATTCATCTACTGCAACTCCTGTTGAAAGAGCTGAGAGTTCTGCTTTGAACATGAATGAAACAGAATGGGAAGATTACACTGACCATGCATCTTCCTTTGGTGCAACCTCAATCCTGAATGAGTGTCATGCTGTTAACACCAACGCAAACTCGTGGGATAAATTGACACCTGCTCAGAACTTTAATGGCAACAATGTGAAATATGAGCCTGTTGACCAAGTTTGTACCCCAAAGAGCGAAAATCAAGGTATGTCTATGTTGAACATCACTTGGCCAGATGTATTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGACTGAGGCCGGTGACAACCTAACCGATTATAAACATGTGGCTGGTGGGACTTATTCTTCAAGTACAGGGGGTTGCTTTATGCACATGGCATAA 1605 0.4368 MSRVKKENEDDMRCNDQSQSRLNGEGNRGSVGVGGGVVLKKGPWTVAEDTILIEYVQKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPNLKKGSFTADEEQLIAQLHLEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRNRAGLPLYPPEVRKKQGSQRGQDTVGIDNGDRGHHGFLPKNNYEMHDVMFENLKENQGILPITAVPENPDISANSILLNSLDSPPYCNSVPSTLPNHHHLRESTMSFLGSSGTNKNWFYPLYHVQDHSSDKIVQSFGLHSPLDPGFSSHNSMYYRHSLSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGSTFPSPPLNESVDVFNQSPLPHGALESGCSSPRNSGTLEDIIYQKKTLPNSMNNCSDKSSHSSTATPVERAESSALNMNETEWEDYTDHASSFGATSILNECHAVNTNANSWDKLTPAQNFNGNNVKYEPVDQVCTPKSENQGMSMLNITWPDVLLASDWHEQCYGHEKNMTEAGDNLTDYKHVAGGTYSSSTGGCFMHMA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07927 534 SMART sant 40 90 IPR001005 -
Vivi3g07927 534 SMART sant 93 141 IPR001005 -
Vivi3g07927 534 FunFam MYB-related transcription factor 40 93 - -
Vivi3g07927 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 143 IPR017930 -
Vivi3g07927 534 ProSiteProfiles Myb-like domain profile. 39 88 IPR001005 -
Vivi3g07927 534 MobiDBLite consensus disorder prediction 1 29 - -
Vivi3g07927 534 MobiDBLite consensus disorder prediction 382 407 - -
Vivi3g07927 534 Gene3D - 96 142 - -
Vivi3g07927 534 SUPERFAMILY Homeodomain-like 40 135 IPR009057 -
Vivi3g07927 534 CDD SANT 43 88 IPR001005 -
Vivi3g07927 534 CDD SANT 96 137 IPR001005 -
Vivi3g07927 534 Gene3D - 40 93 - -
Vivi3g07927 534 MobiDBLite consensus disorder prediction 149 176 - -
Vivi3g07927 534 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Vivi3g07927 534 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 10 504 - -
Vivi3g07927 534 FunFam Transcription factor GAMYB 96 142 - -
Vivi3g07927 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 92 IPR017930 -
Vivi3g07927 534 MobiDBLite consensus disorder prediction 1 16 - -
Vivi3g07927 534 Pfam Myb-like DNA-binding domain 44 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07927 Vivi-Chr3 216865800 216870373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07927 7 511 MYB Transcription Factor Family AT3G11440 40.643 1.78e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g07927 Myb_DNA-bind_6 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07927 K09422 - gmx:100805804 660.603