Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07923 ATGTCAAGCAAGAAGAAACACAAACAGAAACACAGCGACAGCGACGAAGACGACGACGTTTTCTTCTATCGCTATTGCGCTTCATCATCAACCCCCAACGGCACCACCACCGCCGCCACCATATCCAGTAACCAAACCCAATCAAAACCGAACAACAAACGATCGTTAATAGGAGAAACAGGAGAACCCTTAGCACCGTCAAAATCAACGCTATACGTTTCAAATCTAGATTACTCCCTAACAAACTCCGATCTCCACACGCTCTTCTCCACTTTCGGCCGAATAGCGCGTGTGACGGTTCTCAAAGATCGTCACACGCGCCTCAGCCGTGGAGTCGCGTTTGTGCAATTCGTTTCTCGTCATGACGCGCAACGTGCCGTGACGGAGATGAATAAGAAGATTCTTAATGGAAGGACTCTGACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTAGGAAGCGCGTGTATAATACTGAGACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATTTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAACCTAAGAAGCCGCGGCGGGGATTTGGTGGGGTGAGGGATAGGGATAGGGAGGAGGAGGGTGATGATGAGGAGGAAGAGGGTGGTCGGATTGATGCGGAGCAGTTTGAGGATAATTGGGCTTCGGTTGTGGATGATGAAGCGGGGGAGAGATTGCTGGGGAGAAACGGTAATGATGGCGAGGGTTTGGACAACAAGAAGACTAGGAAGAAAGGAAAGAAAGCTGGGTATTTTAGTGATGAGAGTGATCATGATGATGATGATTGA 846 0.4965 MSSKKKHKQKHSDSDEDDDVFFYRYCASSSTPNGTTTAATISSNQTQSKPNNKRSLIGETGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRHDAQRAVTEMNKKILNGRTLTASIAADNGRAPEFIRKRVYNTETETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFGGVRDRDREEEGDDEEEEGGRIDAEQFEDNWASVVDDEAGERLLGRNGNDGEGLDNKKTRKKGKKAGYFSDESDHDDDD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07923 281 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 10 279 IPR044598 GO:0000398|GO:0005689
Vivi3g07923 281 MobiDBLite consensus disorder prediction 29 55 - -
Vivi3g07923 281 MobiDBLite consensus disorder prediction 183 281 - -
Vivi3g07923 281 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 4 153 - -
Vivi3g07923 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vivi3g07923 281 MobiDBLite consensus disorder prediction 253 274 - -
Vivi3g07923 281 SUPERFAMILY RNA-binding domain, RBD 65 152 IPR035979 GO:0003676
Vivi3g07923 281 SMART rrm1_1 70 143 IPR000504 GO:0003723
Vivi3g07923 281 SUPERFAMILY Retrovirus zinc finger-like domains 161 185 IPR036875 GO:0003676|GO:0008270
Vivi3g07923 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Vivi3g07923 281 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Vivi3g07923 281 MobiDBLite consensus disorder prediction 29 62 - -
Vivi3g07923 281 ProSiteProfiles Zinc finger CCHC-type profile. 169 184 IPR001878 GO:0003676|GO:0008270
Vivi3g07923 281 SMART rrm2_1 70 143 IPR003954 GO:0003676
Vivi3g07923 281 Gene3D - 36 227 IPR012677 -
Vivi3g07923 281 SMART c2hcfinal6 168 184 IPR001878 GO:0003676|GO:0008270
Vivi3g07923 281 MobiDBLite consensus disorder prediction 211 225 - -
Vivi3g07923 281 CDD RRM_ZCRB1 68 143 IPR034219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07923 Vivi-Chr3 216796029 216797226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07923 68 131 Eukaryotic Initiation Factors Gene Family AT3G11400 45.312 1.01e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07923 K13154 - psat:127137475 407.527