Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07907 ATGTCAAGCAAGAAGAAACACAAACAGAAACACAGCGAAAGCGACGAAGACGACGACGTTTTCTTCTACCGCTACTGCGCTTCATCATCAACCCCCAACGGCACCACCACCGCCGCCACCACCACATCCAGTAACCAAACCCAATCAAAACCGAACAACAAACGATCGTTAATAGGAGAAACAGGAGAACCCTTAGCACCGTCAAAATCAACGCTATACGTTTCAAATCTAGATTACTCCCTAACAAACTCCGATCTCCACACGCTCTTCTCCACTTTCGGCCGGATAGCGCGTGTGACCGTTCTCAAAGATCGTCACACGCGCCTCAGCCGTGGAGTCGCGTTTGTGCAATTCGTTTCTCGTCATGACGCGCAACGTGCCGTGACGGAGATGAATAAGAAGATTCTCAATGGAAGGACTCTGACTGCTTCTATTGCTGCTGATAATGGACGTGCTCCGGAGTTTATTAGGAAGCGCGTGTATAATACTGAGACTGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATCTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAACCTAAGAAGCCGCGGCGGGGATTTGGTGGGGTGAGGGATAGGGATAGGGATAAGGATGAGGAGGGTGATGAGGAGGAGGAAGAGGGTGGTCGGATTGATGCAGAGCAGTTTGAGGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGGGAGAGGTTGCTGGGGAGAAACGGAAATGATGGTGAGGGTTTGGACAAGAAGAAGACTAGGAAGAAAGGAAAGAAAGCTGGGTATTTTAGCGATGAGAGTGATCATGATGATGATGATTGA 855 0.5006 MSSKKKHKQKHSESDEDDDVFFYRYCASSSTPNGTTTAATTTSSNQTQSKPNNKRSLIGETGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRHDAQRAVTEMNKKILNGRTLTASIAADNGRAPEFIRKRVYNTETETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFGGVRDRDRDKDEEGDEEEEEGGRIDAEQFEDNWASVVDDEAGERLLGRNGNDGEGLDKKKTRKKGKKAGYFSDESDHDDDD 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07907 284 Gene3D - 35 229 IPR012677 -
Vivi3g07907 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Vivi3g07907 284 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Vivi3g07907 284 MobiDBLite consensus disorder prediction 214 228 - -
Vivi3g07907 284 SUPERFAMILY Retrovirus zinc finger-like domains 162 186 IPR036875 GO:0003676|GO:0008270
Vivi3g07907 284 CDD RRM_ZCRB1 69 144 IPR034219 -
Vivi3g07907 284 MobiDBLite consensus disorder prediction 184 284 - -
Vivi3g07907 284 SMART rrm2_1 71 144 IPR003954 GO:0003676
Vivi3g07907 284 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 282 IPR044598 GO:0000398|GO:0005689
Vivi3g07907 284 Pfam Zinc knuckle 170 185 IPR001878 GO:0003676|GO:0008270
Vivi3g07907 284 SMART rrm1_1 71 144 IPR000504 GO:0003723
Vivi3g07907 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Vivi3g07907 284 SUPERFAMILY RNA-binding domain, RBD 66 153 IPR035979 GO:0003676
Vivi3g07907 284 MobiDBLite consensus disorder prediction 29 63 - -
Vivi3g07907 284 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Vivi3g07907 284 MobiDBLite consensus disorder prediction 240 262 - -
Vivi3g07907 284 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07907 Vivi-Chr3 216539750 216541077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07907 70 146 Eukaryotic Initiation Factors Gene Family AT4G34110 33.766 3.81e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07907 K13154 - psat:127137475 390.193