Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07901 ATGGAAGAAGGATTAGGTCGAAACTCGGTTCCTCCTCCCGGCTCCATTGACAAGTCTAAGATTCTAGATATTAAGCCTATAAGATGTTTGATACCTGTTTTTTCGAAGAATCCTCAAGCTCCGTATTCAGGAGAGTATCCGGCCGGGTTTTCTCCGTTTTTCCCATTTGGTGGACCTCAGGAGGCTTCAACCACTGGGGTGAAACCTAGAGGTAGAGCAATGCCGACTCCGATTCGGTCATTCAGGAGCCCTGTAGGCGAGGATGAGGATCTCAATGGCAATGATGGTTATAGTCACAAAAGAAATGCACCGCCGAATACGAGCCGGGTCAAGTTACAGAAGATCAAACCAAATCATAATTCCCATGCTGATTTGAGTGGTTTAGTTGGTATAGGCGCGACACAAAAAAACGATGGTAACCGAGAAGTTGTTAATATTGTGCTCATGTCGTTTGATGCACTGAGAAGAAGGCTAAGTCAACTTGTTGATGCCAATGATGTGGACATGGGTATGTTCAAGCGTACTGATTTGAAAGCTGGGAATATTTGTATGTCCAAAGGAGTTCGAACAAATGCGACAAAGAGAATTGGATCGGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTGTTGGTTTGCATGCCCAATCGATGGGGGGAATTGATGCCATCAAGAGTGACCATGAGAATGAGACTTTGGCTGTTAGCATTGTTTCGTCGGGAGAATACGACGACGATGAAGCTGAGGATGGTGATGTTTTAATTTACACCGGTCAGGGTGAGAACTTTAACAAGAAAGAGAAGCACTTGTCTGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGAAGTTCAAGACAACATAATGAAGTAAGAGTCATCCGGGGAATCAAAGATACTACGTCTGTGGGCTCAAAAATCTATGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGGCTGAAAAAGCAAAAAGCGGCGGCGGCGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTTCTGTTTGGAGATCAATTCAGAAGTGGAAATCTGGAATTCTTGCGAGGTCTGGACTAATTCTCCCGGACCTATCCTCGGGAGCTGAGAGTATTCCTGTTTCACTTGTCAATGAAGTCGACAACGTGAAGTCACCTGCCTTTTTTACGTATTTCCAGTCGCTTAGACATCCAAAATCATTCAGTTTAACGCAGCCTTCACATGGTTGCAGCTGTAGTTTTAAAAAAGCATGTGTCCCAGGTGATTTAGACTGCTCTTGCATTCAGAGAAACGAAGGTGATTTTCCGTATATTATCCACGGTGTTCTAGTGAGCCGGAAGCCATTGGTTCATGAATGTGGCCCTACATGTAAATGTTATCCTAACTGCAAAAACCGAGTATCTCAATCTGGTTTAAAGCACCAAATGGAAGTGTTCAAAACGAAGGATAAAGGCTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGCGCTTTTATCTGCGAGTATGCAGGAGAAGTTATTGATAAAGCTAGGTTAACTCAGCTTATACAAGAAGGAGACACTGATGAGTATGTTTTTGATACAACCCGTGTTTACGAATCTTTCAAGTGGAATTACGAGCCTAAGTTACTCGAAGAAGTGAGAACAAACGAGTCTAGTGAGGATTATGCTATGCCACATCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCACCAAATGTTTTCTGGCAGCCTGTCTTATACGAAGAGAACAACCAGTCATTTCTCCACGTTGCATTTTTTGCGTTGAGACATATTCCGCCAATGCAAGAGTTAACATATGACTACGGGGTTAATCGATCTGATAATGCTGAGGGTAGTAGTGCACACAAAGGTCGAAAGAGATGCTTTTGTGGATCATTGAAATGCCGCGGTTCTTTTACTTGA 1995 0.4281 MEEGLGRNSVPPPGSIDKSKILDIKPIRCLIPVFSKNPQAPYSGEYPAGFSPFFPFGGPQEASTTGVKPRGRAMPTPIRSFRSPVGEDEDLNGNDGYSHKRNAPPNTSRVKLQKIKPNHNSHADLSGLVGIGATQKNDGNREVVNIVLMSFDALRRRLSQLVDANDVDMGMFKRTDLKAGNICMSKGVRTNATKRIGSVPGVEIGDIFFFRMEMCVVGLHAQSMGGIDAIKSDHENETLAVSIVSSGEYDDDEAEDGDVLIYTGQGENFNKKEKHLSDQKLHRGNLALDRSSRQHNEVRVIRGIKDTTSVGSKIYVYDGLYKIQDSWAEKAKSGGGGLFKYKLIRVPGQPSAFSVWRSIQKWKSGILARSGLILPDLSSGAESIPVSLVNEVDNVKSPAFFTYFQSLRHPKSFSLTQPSHGCSCSFKKACVPGDLDCSCIQRNEGDFPYIIHGVLVSRKPLVHECGPTCKCYPNCKNRVSQSGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLTQLIQEGDTDEYVFDTTRVYESFKWNYEPKLLEEVRTNESSEDYAMPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMQELTYDYGVNRSDNAEGSSAHKGRKRCFCGSLKCRGSFT 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07901 664 Pfam Pre-SET motif 378 478 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi3g07901 664 SUPERFAMILY SET domain 383 661 IPR046341 -
Vivi3g07901 664 ProSiteProfiles SET domain profile. 486 633 IPR001214 GO:0005515
Vivi3g07901 664 ProSiteProfiles Pre-SET domain profile. 420 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi3g07901 664 Pfam SAD/SRA domain 196 349 IPR003105 -
Vivi3g07901 664 SMART preset_2 374 470 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi3g07901 664 SMART set_7 486 639 IPR001214 GO:0005515
Vivi3g07901 664 Gene3D - 179 367 IPR036987 -
Vivi3g07901 664 ProSiteProfiles Post-SET domain profile. 648 664 IPR003616 -
Vivi3g07901 664 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 180 364 - -
Vivi3g07901 664 MobiDBLite consensus disorder prediction 59 108 - -
Vivi3g07901 664 SUPERFAMILY PUA domain-like 179 367 IPR015947 -
Vivi3g07901 664 Pfam SET domain 497 633 IPR001214 GO:0005515
Vivi3g07901 664 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 59 664 IPR025794 GO:0016571
Vivi3g07901 664 SMART G9a_1 192 349 IPR003105 -
Vivi3g07901 664 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 104 656 - -
Vivi3g07901 664 Gene3D SET domain 368 663 IPR046341 -
Vivi3g07901 664 ProSiteProfiles YDG domain profile. 197 345 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07901 Vivi-Chr3 216483839 216486984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07901 6 663 Su(var)3-9 homologs AT1G73100 52.500 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi3g07901 SAD_SRA 9e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07901 K24405 - gmx:100812173 953.355