Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07845 ATGTCACCACTATTTTCCCTTCTCTTTTTCATCCTCTTAGCACCATTATTACTTCTAGCTCAATCTCCATCACCATCTTCTTCTCCTTCTTCTTCCTCTTCGGCAGCATGCAGAGCGACATTGTATCCAAAACTATGTCGCTCGATGCTATCCACCATCCGATCATCGACATCCGATCCATACAACTATGGAAAATTCTCCATAAAACAAAACCTCAAACTAACACGAAAACTATCAAAAGTATTTCTCGATTTCCTCAAACGCCACCAATCATCATCGTCTCTAAACCGTGAAGAGTTTGGCGCATTGGTTGATTGCAAAGACCTTAACCAACTCAATGTAGACTACTTAGAATCAATCTCTGATGAACTCAAGTCAGCCACTAGTTCATCATCCGATACCGAACTCGTTGATAAAATCGAAAGCTATCTTAGTGCTGTTAGTACTAATCACTACACTTGCTTTGATGGATTGGTTGTCACAAAAAGTAGCATTGCCAATGCTCTTGCTGTTCCATTGAAGGATGCTACACAGTTCTATAGTGTTTCTCTTGGTTTGGTTAGTGATGCTTTGAATAAACATATGAAGAGGAATAAGACTAGGAAACATGGTCTTCCTAATAAGTCATTCAAAGTTAGACAACCACTTGAGAAGCTCATCAAGCTTCTCAGGACAAAATATAGTTGCAACAAAACATCAAACTGTACAAATACTAGAAGTGAAAGGATTCTAAAAGAAAGTCAAAGCCAAGGAATTCTATTAAACGATTATGTGCTTGTGAGTCCTTATGGAAATGCCAACCACACTTCCATTGGAGATGCTATTGCTGCTGCACCAAATAACTCTACTCCACAAGATGGTTATTTTCTTATCTATGTTAGAGAAGGTTACTATGAAGAATATGTCATTGTTCCTAAAGAAAAGAAGAATATTCTTCTAGTTGGAGATGGTATTAACAAAACAATCATCACAGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTATCTGGAGAAAGATTTATAGCAGTAGACATTACATTCAGAAACACAGCAGGTCCTGAAAAGCATCAAGCAGTAGCAGTCCGAAGCAACGCCGATCTCTCGACGTTCTACCGATGCAGCTTCGAAGGATACCAAGACACACTCTATGCTCATTCATTAAGACAATTCTATAGAGACTGCAAAATCTACGGAACCGTCGACTTCATATTCGGCAACGCAGCAGTAGTTTTCCAGAACTGCAACATCTATGCTAGAAAGCCACTTCCAAATCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCAAATCAAAACACAGGAATCTCAATCCAGAACTGCACTGTTGATGCTGCACCTGATTTGGCTGGTGACTTGAATTCGACATCGAGTTACTTAGGTAGACCGTGGAAGATTTATTCAAGAACTGTTTATATGCAATCATACATCGGTGATTTTGTCGATCCTGCTGGTTGGTTAGAGTGGAATGGAACACTTGGTTTAGATACTATTTTTTACGGCGAATTTGATAACTATGGACCGGGTTCTTCGACTGATAATCGGGTTCAATGGCCTGGTTATTTTCTTTTGAATGATACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACTTGGCTTCCAGATACAGATATACCTTACACTGAAGGATTACTAAACTAA 1719 0.3921 MSPLFSLLFFILLAPLLLLAQSPSPSSSPSSSSSAACRATLYPKLCRSMLSTIRSSTSDPYNYGKFSIKQNLKLTRKLSKVFLDFLKRHQSSSSLNREEFGALVDCKDLNQLNVDYLESISDELKSATSSSSDTELVDKIESYLSAVSTNHYTCFDGLVVTKSSIANALAVPLKDATQFYSVSLGLVSDALNKHMKRNKTRKHGLPNKSFKVRQPLEKLIKLLRTKYSCNKTSNCTNTRSERILKESQSQGILLNDYVLVSPYGNANHTSIGDAIAAAPNNSTPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFRNTAGPEKHQAVAVRSNADLSTFYRCSFEGYQDTLYAHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTVDAAPDLAGDLNSTSSYLGRPWKIYSRTVYMQSYIGDFVDPAGWLEWNGTLGLDTIFYGEFDNYGPGSSTDNRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYTEGLLN 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07845 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 189 IPR035513 -
Vivi3g07845 572 SMART PMEI_2 28 186 IPR006501 GO:0004857
Vivi3g07845 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 188 IPR035513 -
Vivi3g07845 572 FunFam Pectinesterase 253 570 - -
Vivi3g07845 572 CDD PMEI-like_3 35 188 - -
Vivi3g07845 572 SUPERFAMILY Pectin lyase-like 256 569 IPR011050 -
Vivi3g07845 572 Gene3D - 256 572 IPR012334 -
Vivi3g07845 572 NCBIfam pectinesterase inhibitor domain 1 167 IPR006501 GO:0004857
Vivi3g07845 572 PANTHER PECTINESTERASE 16 560 - -
Vivi3g07845 572 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Vivi3g07845 572 Pfam Pectinesterase 258 555 IPR000070 GO:0030599|GO:0042545
Vivi3g07845 572 Pfam Plant invertase/pectin methylesterase inhibitor 34 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07845 Vivi-Chr3 215487923 215491405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07845 36 572 Carbohydrate Esterase AT3G10720 61.070 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07845 K01051 - gmx:100816503 932.554