Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07844 ATGTCTTCCTTCAAGTCCTATGGAAAAGTTAACGAACATGATCAAATGTTGTTAGAAGCAAAGCGAAAAACCCGAAAAAGAATCACAATCATAAGCTTATCTTCAATAATCTTAGCCACTATTGTAATTGCATCTGTATTCGGAGTTGTTAGCACCAAAAAAAACTCGAAAAACGATGTTGACAATTACGCGTCACAAAATTCCGTGACAAATTCGATGAAAGCTGTTTGTGATGTGACATTGTACAAGGATTCATGTTATGACAGCCTTAGTTCTGTTGTGAACTCATCAGGGAAAGATGTTCAACCTGAGGAGTTGTTTAAGTTATCGATCAATGTGGCTTTGACTTATGTGTCGAAAGCTGTTGAGTATTTCAATGAACATGGTGTTTTCGAAAAGTTGATAGGTCATGATGATAGTAGAACTAAGGAAGCTTTGAAAAATTGTAAGGATCTTTTCGGACTCGCTGTTGATCATTTGAATAACTCGTTGATTACGTCAGGAGAAAATTCTTCAGTTCTTCGAGTTTTTGATGATATCCAAACATGGCTAAGCGCCGCAGGTACATACCAAGAAACATGCATTGAAGGTTTTGAGGATGGAAAAGAAGAGCTTAAGACTTATGTTACAAGCTATCTTAAAAATTCGACAGAGTACACGAGCAATAGTCTTGCGATAATTACATGGATTAACAAGGTTGCGAGCACTCTAAATTTGAGGCGATTACTAAGTTTACCATATGAAAACGAGCCACCGAAATGGTTTCATTCGAAAGACAGGAAGCTACTTGCTACAAAGGATTTGAGATCAAAAGCTGATATTGTTGTTGCAAAAGATGGTAGTGGAAAATATAGGACTATATCTGATGCACTTAAACATGTTCCTAATAAGAGTAAGAAGAGGATTGTGATTTATGTGAAGAAAGGGATTTACTATGAAAATGTGAGAGTTGAGAAAACAAAATGGAATGTTATGATTGTTGGTGATGGTATGACTTCTTCAGTTGTTTCTGGTAGGCTTAACTTCGTCGATGGCACACCAACTTTTTCGTCAGCAACATTTGCTGTGTTTGGAAAGAATTTCATAGCTCGAGACATGGGTTTTCGCAACACGGCCGGTCCACAGAAGCATCAAGCCGTGGCGCTAATGACAAGTGCTGATCAAGCAGTTTACTATAAGTGTCACATTGATGCATATCAAGACACTCTTTACGCGCATTCGAATCGCCAATTCTACCGAGAATGCAACATTTACGGAACAGTCGATTTCATTTTTGGAAATTCAGCAGTCGTGATACAAAACTGCAACATTAGGCCAAAGTTACCTATGCATGGTCAGCAGATCACAATCACAGCACAGGGAAAAACTGACCCTAACATGAACACAGGTATTTCAATTCAGTATTGCAACATTGCGCCTTTCGGAAACTTGAGTGATGTTCAGACGTATCTCGGAAGACCGTGGAAGAATTACTCGACAACGGTATACATGAGATCGAGAATGGAAGGTTTTGTTAATCCAAGTGGTTGGTTACCTTGGGTAGGAAACTCGGCGCCGGACACTATTTTTTATGCAGAATTTCAGAATGTTGGAGCAGGTTCTTCAACAAAGAATAGAGTGAAATGGAAGGGTTTGAGAAATATTAGTATTAAACAAGCTAGTAAGTTTTCTGTTAAGAGTTTTATTCAAGGTGATAGATGGATTCCTGCATCAAATTCACCTTTTAAGTCTACTATATGA 1740 0.3822 MSSFKSYGKVNEHDQMLLEAKRKTRKRITIISLSSIILATIVIASVFGVVSTKKNSKNDVDNYASQNSVTNSMKAVCDVTLYKDSCYDSLSSVVNSSGKDVQPEELFKLSINVALTYVSKAVEYFNEHGVFEKLIGHDDSRTKEALKNCKDLFGLAVDHLNNSLITSGENSSVLRVFDDIQTWLSAAGTYQETCIEGFEDGKEELKTYVTSYLKNSTEYTSNSLAIITWINKVASTLNLRRLLSLPYENEPPKWFHSKDRKLLATKDLRSKADIVVAKDGSGKYRTISDALKHVPNKSKKRIVIYVKKGIYYENVRVEKTKWNVMIVGDGMTSSVVSGRLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQITITAQGKTDPNMNTGISIQYCNIAPFGNLSDVQTYLGRPWKNYSTTVYMRSRMEGFVNPSGWLPWVGNSAPDTIFYAEFQNVGAGSSTKNRVKWKGLRNISIKQASKFSVKSFIQGDRWIPASNSPFKSTI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07844 579 PANTHER PECTINESTERASE 40 569 - -
Vivi3g07844 579 CDD PMEI-like_3 75 232 - -
Vivi3g07844 579 Pfam Plant invertase/pectin methylesterase inhibitor 72 226 IPR006501 GO:0004857
Vivi3g07844 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 231 IPR035513 -
Vivi3g07844 579 Gene3D - 268 579 IPR012334 -
Vivi3g07844 579 FunFam Pectinesterase 69 231 - -
Vivi3g07844 579 NCBIfam pectinesterase inhibitor domain 56 230 IPR006501 GO:0004857
Vivi3g07844 579 FunFam Pectinesterase 267 579 - -
Vivi3g07844 579 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Vivi3g07844 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 230 IPR035513 -
Vivi3g07844 579 SMART PMEI_2 68 226 IPR006501 GO:0004857
Vivi3g07844 579 SUPERFAMILY Pectin lyase-like 270 576 IPR011050 -
Vivi3g07844 579 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07844 Vivi-Chr3 215484751 215487056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07844 7 579 Carbohydrate Esterase AT3G10710 56.969 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07844 - - gmx:100811152 914.064