Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07823 ATGTTCCCAAATATGTTTCCCATGGCTACAAGTCAGTTGCAGCAATTTAATACTCTTCCTGTCTTGCCTGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATCGGAGGAAACACCGCTGGTCCAGGTGACGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTCGTGGAGATGAGGTCTGTCGAGGAAGCCAGCAATGCAATGGCTCTAGATGGAATTATTTTTGAGGGTGCACCAGTCAAGGTCAGGAGACCCACTGATTATAATCCTTCTCTAGCTGCCGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCCGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGAATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGGGAACTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACCGATATTGCTTGTGCAGCTCTCAATGGAATTAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCAATGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTCCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCGGATGAGCTCAAAGATGACGAGGACTATGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGTGATTCCTCGCCCACGACCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGAAGGTTCTGCAAAAGCTCGTGCTGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCTGAGGGAGATTATGAAGGCTAA 1119 0.4486 MFPNMFPMATSQLQQFNTLPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVEGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07823 372 CDD RRM2_U2AF65 156 232 - -
Vivi3g07823 372 SMART rrm1_1 37 115 IPR000504 GO:0003723
Vivi3g07823 372 SMART rrm1_1 157 230 IPR000504 GO:0003723
Vivi3g07823 372 SMART rrm1_1 272 358 IPR000504 GO:0003723
Vivi3g07823 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 355 IPR000504 GO:0003723
Vivi3g07823 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Vivi3g07823 372 Gene3D - 31 132 IPR012677 -
Vivi3g07823 372 FunFam U2 snRNP auxiliary factor large subunit 31 132 - -
Vivi3g07823 372 FunFam U2 snRNP auxiliary factor large subunit 133 248 - -
Vivi3g07823 372 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 370 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07823 372 CDD RRM3_U2AF65 270 358 - -
Vivi3g07823 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Vivi3g07823 372 SUPERFAMILY RNA-binding domain, RBD 157 363 IPR035979 GO:0003676
Vivi3g07823 372 Gene3D - 266 371 IPR012677 -
Vivi3g07823 372 PANTHER RNA-BINDING PROTEIN 1 370 - -
Vivi3g07823 372 Gene3D - 147 247 IPR012677 -
Vivi3g07823 372 SUPERFAMILY RNA-binding domain, RBD 20 122 IPR035979 GO:0003676
Vivi3g07823 372 FunFam U2 snRNP auxiliary factor large subunit 266 371 - -
Vivi3g07823 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 119 IPR000504 GO:0003723
Vivi3g07823 372 CDD RRM1_U2AF65 35 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07823 Vivi-Chr3 215156467 215159724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07823 158 351 Eukaryotic Initiation Factors Gene Family AT1G22760 25.641 2.07e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07823 K12837 - gmx:100793801 693.73