Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07822 ATGTTCCCAAATATGTTTCCCATGGCTACAAGTCAGCAATTTAATACTCTTCCTGTCTTGCCTGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATCGGAGGAAACACCGCTGGTCCAGGTGACGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTCGTGGAGATGAGGTCTGTCGAGGAAGCCAGCAATGCAATGGCTCTAGATGGAATTATTTTTGAGGGTGCACCAGTCAAGGTCAGGAGACCCACTGATTATAATCCTTCTCTAGCTGCCGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCCGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGAATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGGGAACTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACCGATATTGCTTGTGCAGCTCTCAATGGAATTAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCAATGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTCCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCGGATGAGCTCAAAGATGACGAGGACTATGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGTGATTCCTCGCCCACGACCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGAAGGTTCTGCAAAAGCTCGTGCTGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCTGAGGGAGATTATGAAGGCTAA 1113 0.4483 MFPNMFPMATSQQFNTLPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVEGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07822 370 Gene3D - 29 130 IPR012677 -
Vivi3g07822 370 CDD RRM3_U2AF65 268 356 - -
Vivi3g07822 370 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 368 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07822 370 Gene3D - 145 245 IPR012677 -
Vivi3g07822 370 Gene3D - 264 369 IPR012677 -
Vivi3g07822 370 FunFam U2 snRNP auxiliary factor large subunit 264 369 - -
Vivi3g07822 370 SUPERFAMILY RNA-binding domain, RBD 20 120 IPR035979 GO:0003676
Vivi3g07822 370 FunFam U2 snRNP auxiliary factor large subunit 29 130 - -
Vivi3g07822 370 CDD RRM1_U2AF65 33 115 - -
Vivi3g07822 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 232 IPR000504 GO:0003723
Vivi3g07822 370 PANTHER RNA-BINDING PROTEIN 1 368 - -
Vivi3g07822 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 117 IPR000504 GO:0003723
Vivi3g07822 370 CDD RRM2_U2AF65 154 230 - -
Vivi3g07822 370 SMART rrm1_1 35 113 IPR000504 GO:0003723
Vivi3g07822 370 SMART rrm1_1 155 228 IPR000504 GO:0003723
Vivi3g07822 370 SMART rrm1_1 270 356 IPR000504 GO:0003723
Vivi3g07822 370 FunFam U2 snRNP auxiliary factor large subunit 131 246 - -
Vivi3g07822 370 SUPERFAMILY RNA-binding domain, RBD 155 360 IPR035979 GO:0003676
Vivi3g07822 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 225 IPR000504 GO:0003723
Vivi3g07822 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 353 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07822 Vivi-Chr3 215156467 215159725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07822 156 349 Eukaryotic Initiation Factors Gene Family AT1G22760 25.641 2.16e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07822 K12837 - gmx:100793801 686.026