Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07821 ATGTTCCCAAATATGTTTCCCATGGCTACAAGTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATCGGAGGAAACACCGCTGGTCCAGGTGACGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTCGTGGAGATGAGGTCTGTCGAGGAAGCCAGCAATGCAATGGCTCTAGATGGAATTATTTTTGAGGGTGCACCAGTCAAGGTCAGGAGACCCACTGATTATAATCCTTCTCTAGCTGCCGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCCGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGAATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGGGAACTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACCGATATTGCTTGTGCAGCTCTCAATGGAATTAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCAATGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTCCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCGGATGAGCTCAAAGATGACGAGGACTATGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGTGATTCCTCGCCCACGACCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGAAGGTTCTGCAAAAGCTCGTGCTGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCTGAGGGAGATTATGAAGGCTAA 1080 0.45 MFPNMFPMATSQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVEGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07821 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 106 IPR000504 GO:0003723
Vivi3g07821 359 Gene3D - 253 358 IPR012677 -
Vivi3g07821 359 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 11 357 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07821 359 CDD RRM1_U2AF65 22 104 - -
Vivi3g07821 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 342 IPR000504 GO:0003723
Vivi3g07821 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Vivi3g07821 359 FunFam U2 snRNP auxiliary factor large subunit 120 235 - -
Vivi3g07821 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Vivi3g07821 359 Gene3D - 134 234 IPR012677 -
Vivi3g07821 359 PANTHER RNA-BINDING PROTEIN 5 357 - -
Vivi3g07821 359 SUPERFAMILY RNA-binding domain, RBD 7 109 IPR035979 GO:0003676
Vivi3g07821 359 SUPERFAMILY RNA-binding domain, RBD 144 349 IPR035979 GO:0003676
Vivi3g07821 359 CDD RRM2_U2AF65 143 219 - -
Vivi3g07821 359 CDD RRM3_U2AF65 257 345 - -
Vivi3g07821 359 Gene3D - 18 119 IPR012677 -
Vivi3g07821 359 SMART rrm1_1 24 102 IPR000504 GO:0003723
Vivi3g07821 359 SMART rrm1_1 144 217 IPR000504 GO:0003723
Vivi3g07821 359 SMART rrm1_1 259 345 IPR000504 GO:0003723
Vivi3g07821 359 FunFam U2 snRNP auxiliary factor large subunit 18 119 - -
Vivi3g07821 359 FunFam U2 snRNP auxiliary factor large subunit 253 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07821 Vivi-Chr3 215156467 215159725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07821 145 338 Eukaryotic Initiation Factors Gene Family AT1G22760 25.641 2.55e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07821 K12837 - gmx:100793801 664.455