Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07820 ATGTCCAAGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACTGTTACCTACTTTGGTCAGATTACTGGGGCAAGTCCTGCAATTCCTGGAATGTTCCCAAATATGTTTCCCATGGCTACAAGTCAGTTGCAGCAATTTAATACTCTTCCTGTCTTGCCTGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATCGGAGGAAACACCGCTGGTCCAGGTGACGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTCGTGGAGATGAGGTCTGTCGAGGAAGCCAGCAATGCAATGGCTCTAGATGGAATTATTTTTGAGGGTGCACCAGTCAAGGTCAGGAGACCCACTGATTATAATCCTTCTCTAGCTGCCGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCCGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGAATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGGGAACTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACCGATATTGCTTGTGCAGCTCTCAATGGAATTAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCAATGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTCCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCGGATGAGCTCAAAGATGACGAGGACTATGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGTGATTCCTCGCCCACGACCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGAAGGTTCTGCAAAAGCTCGTGCTGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCTGAGGGAGATTATGAAGGCTAA 1230 0.4496 MSKEESMHLFLVGLVRLQLETVTYFGQITGASPAIPGMFPNMFPMATSQLQQFNTLPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVEGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07820 409 SMART rrm1_1 194 267 IPR000504 GO:0003723
Vivi3g07820 409 SMART rrm1_1 309 395 IPR000504 GO:0003723
Vivi3g07820 409 SMART rrm1_1 74 152 IPR000504 GO:0003723
Vivi3g07820 409 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 407 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07820 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Vivi3g07820 409 FunFam U2 snRNP auxiliary factor large subunit 303 408 - -
Vivi3g07820 409 PANTHER RNA-BINDING PROTEIN 30 407 - -
Vivi3g07820 409 SUPERFAMILY RNA-binding domain, RBD 194 400 IPR035979 GO:0003676
Vivi3g07820 409 CDD RRM2_U2AF65 193 269 - -
Vivi3g07820 409 CDD RRM3_U2AF65 307 395 - -
Vivi3g07820 409 Gene3D - 303 408 IPR012677 -
Vivi3g07820 409 Gene3D - 68 169 IPR012677 -
Vivi3g07820 409 CDD RRM1_U2AF65 72 154 - -
Vivi3g07820 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 392 IPR000504 GO:0003723
Vivi3g07820 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Vivi3g07820 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 156 IPR000504 GO:0003723
Vivi3g07820 409 FunFam U2 snRNP auxiliary factor large subunit 170 285 - -
Vivi3g07820 409 FunFam U2 snRNP auxiliary factor large subunit 68 169 - -
Vivi3g07820 409 Gene3D - 184 284 IPR012677 -
Vivi3g07820 409 SUPERFAMILY RNA-binding domain, RBD 57 159 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07820 Vivi-Chr3 215156467 215159726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07820 195 388 Eukaryotic Initiation Factors Gene Family AT1G22760 25.641 2.05e-07 51.2