Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07818 ATGTCCAAGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACTGTTACCTACTTTGGTCAGATTACTGGGGCAAGTCCTGCAATTCCTGGAATGTTCCCAAATATGTTTCCCATGGCTACAAGTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATCGGAGGAAACACCGCTGGTCCAGGTGACGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTCGTGGAGATGAGGTCTGTCGAGGAAGCCAGCAATGCAATGGCTCTAGATGGAATTATTTTTGAGGGTGCACCAGTCAAGGTCAGGAGACCCACTGATTATAATCCTTCTCTAGCTGCCGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCCGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGAATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGGGAACTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACCGATATTGCTTGTGCAGCTCTCAATGGAATTAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCAATGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTCCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCGGATGAGCTCAAAGATGACGAGGACTATGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGTGATTCCTCGCCCACGACCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGAAGGTTCTGCAAAAGCTCGTGCTGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCTGAGGGAGATTATGAAGGCTAA 1191 0.4509 MSKEESMHLFLVGLVRLQLETVTYFGQITGASPAIPGMFPNMFPMATSQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVEGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07818 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 251 IPR000504 GO:0003723
Vivi3g07818 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 379 IPR000504 GO:0003723
Vivi3g07818 396 CDD RRM2_U2AF65 180 256 - -
Vivi3g07818 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 258 IPR000504 GO:0003723
Vivi3g07818 396 SUPERFAMILY RNA-binding domain, RBD 40 146 IPR035979 GO:0003676
Vivi3g07818 396 FunFam U2 snRNP auxiliary factor large subunit 157 272 - -
Vivi3g07818 396 SMART rrm1_1 61 139 IPR000504 GO:0003723
Vivi3g07818 396 SMART rrm1_1 181 254 IPR000504 GO:0003723
Vivi3g07818 396 SMART rrm1_1 296 382 IPR000504 GO:0003723
Vivi3g07818 396 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 23 394 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07818 396 PANTHER RNA-BINDING PROTEIN 30 394 - -
Vivi3g07818 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 143 IPR000504 GO:0003723
Vivi3g07818 396 Gene3D - 290 395 IPR012677 -
Vivi3g07818 396 SUPERFAMILY RNA-binding domain, RBD 181 387 IPR035979 GO:0003676
Vivi3g07818 396 CDD RRM3_U2AF65 294 382 - -
Vivi3g07818 396 FunFam U2 snRNP auxiliary factor large subunit 290 395 - -
Vivi3g07818 396 FunFam U2 snRNP auxiliary factor large subunit 55 156 - -
Vivi3g07818 396 Gene3D - 171 271 IPR012677 -
Vivi3g07818 396 Gene3D - 55 156 IPR012677 -
Vivi3g07818 396 CDD RRM1_U2AF65 59 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07818 Vivi-Chr3 215156467 215159727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07818 182 375 Eukaryotic Initiation Factors Gene Family AT1G22760 25.641 2.85e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07818 K12837 - gmx:100793801 685.641