Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07810 ATGTCCAAGGAGGAATCAATGCACCTGTTTTTTGGTCAGATTACCGGTGCAAGTCCTGCAATTCCTGGAATGTTCTCAAATATGTTTCCCATGGCTACAAGTCAGCAATTTAATGCTCTCCCTGTCTTGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATTGGAGGAAACACCGCTGGTCCAGGTGATGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTTGTGGAGATGAGGTCGGTCGAGGAAGCCAGCAATGCAATGGCTTTAAATGGAATTATTTTTGAGAGTGCACCAGTTAAGGTCAAGAGACCTACTGATTATAATCCTTCTCTAGCTGCTGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCAGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGGATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACAGATATTGCTTGTGCAGCTCTCAATGGAATAAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCCATGCAGCCTAAGCCGGAGCAAGAGAGCATTTTGATGCATGCACAACAGCAGATTGCTCTCCAGAAACTTATGTTACAGCCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCCGATGAGCTCAAAGATGACGAGGACTACGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGCGATTCCTCGCCCACGATCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGCAGGTTCTGCAAAAGCTCGTGCGGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCCGAGGGCGATTATGAAGGCTAA 1182 0.4484 MSKEESMHLFFGQITGASPAIPGMFSNMFPMATSQQFNALPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALNGIIFESAPVKVKRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVAIPRPRSDGELCPGVGKVFLEYADVAGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07810 393 Gene3D - 168 268 IPR012677 -
Vivi3g07810 393 FunFam U2 snRNP auxiliary factor large subunit 52 153 - -
Vivi3g07810 393 Gene3D - 287 392 IPR012677 -
Vivi3g07810 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 255 IPR000504 GO:0003723
Vivi3g07810 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 248 IPR000504 GO:0003723
Vivi3g07810 393 CDD RRM2_U2AF65 177 253 - -
Vivi3g07810 393 CDD RRM3_U2AF65 291 379 - -
Vivi3g07810 393 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 7 391 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07810 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 140 IPR000504 GO:0003723
Vivi3g07810 393 FunFam U2 snRNP auxiliary factor large subunit 287 392 - -
Vivi3g07810 393 Gene3D - 52 153 IPR012677 -
Vivi3g07810 393 SUPERFAMILY RNA-binding domain, RBD 43 143 IPR035979 GO:0003676
Vivi3g07810 393 SUPERFAMILY RNA-binding domain, RBD 178 384 IPR035979 GO:0003676
Vivi3g07810 393 PANTHER RNA-BINDING PROTEIN 16 391 - -
Vivi3g07810 393 SMART rrm1_1 58 136 IPR000504 GO:0003723
Vivi3g07810 393 SMART rrm1_1 293 379 IPR000504 GO:0003723
Vivi3g07810 393 SMART rrm1_1 178 251 IPR000504 GO:0003723
Vivi3g07810 393 FunFam U2 snRNP auxiliary factor large subunit 154 269 - -
Vivi3g07810 393 CDD RRM1_U2AF65 56 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07810 Vivi-Chr3 215079757 215082740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07810 15 374 Eukaryotic Initiation Factors Gene Family AT1G22760 21.448 9.80e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07810 K12837 - gmx:100779915 697.967