Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07809 ATGTCCAAGGAGGAATCAATGCACCTGTTTTTTGGTCAGATTACCGGTGCAAGTCCTGCAATTCCTGGAATGTTCTCAAATATGTTTCCCATGGCTACAAGTCAGTTGCAGCAATTTAATGCTCTCCCTGTCTTGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATTGGAGGAAACACCGCTGGTCCAGGTGATGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTTGTGGAGATGAGGTCGGTCGAGGAAGCCAGCAATGCAATGGCTTTAAATGGAATTATTTTTGAGAGTGCACCAGTTAAGGTCAAGAGACCTACTGATTATAATCCTTCTCTAGCTGCTGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGCGCAGTCGGCCTATCACCTGGATCTGCTGGGGGACTTGATGGTCCTGATCGGATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTTTGTGTTTATCAAGATCTTGCCGTTACAGATATTGCTTGTGCAGCTCTCAATGGAATAAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACAAACCCCATGCAGCCTAAGCCGGAGCAAGAGAGCATTTTGATGCATGCACAACAGCAGATTGCTCTCCAGAAACTTATGTTACAGCCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCCGATGAGCTCAAAGATGACGAGGACTACGAAGAGATTCTTGATGATATGCGACAAGAGTGCTCCAAATTTGGTAATTTGGTGAATGTGGCGATTCCTCGCCCACGATCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGCAGGTTCTGCAAAAGCTCGTGCGGGATTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATTCAGAGAACAAATTTGCCGAGGGCGATTATGAAGGCTAA 1188 0.4487 MSKEESMHLFFGQITGASPAIPGMFSNMFPMATSQLQQFNALPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALNGIIFESAPVKVKRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVAIPRPRSDGELCPGVGKVFLEYADVAGSAKARAGLNGRKFGGNQVVAVYYSENKFAEGDYEG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07809 395 SMART rrm1_1 60 138 IPR000504 GO:0003723
Vivi3g07809 395 SMART rrm1_1 180 253 IPR000504 GO:0003723
Vivi3g07809 395 SMART rrm1_1 295 381 IPR000504 GO:0003723
Vivi3g07809 395 Gene3D - 170 270 IPR012677 -
Vivi3g07809 395 CDD RRM1_U2AF65 58 140 - -
Vivi3g07809 395 Gene3D - 289 394 IPR012677 -
Vivi3g07809 395 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 7 393 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi3g07809 395 FunFam U2 snRNP auxiliary factor large subunit 289 394 - -
Vivi3g07809 395 SUPERFAMILY RNA-binding domain, RBD 180 386 IPR035979 GO:0003676
Vivi3g07809 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 142 IPR000504 GO:0003723
Vivi3g07809 395 FunFam U2 snRNP auxiliary factor large subunit 156 271 - -
Vivi3g07809 395 FunFam U2 snRNP auxiliary factor large subunit 54 155 - -
Vivi3g07809 395 Coils Coil 386 395 - -
Vivi3g07809 395 SUPERFAMILY RNA-binding domain, RBD 44 145 IPR035979 GO:0003676
Vivi3g07809 395 CDD RRM2_U2AF65 179 255 - -
Vivi3g07809 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 257 IPR000504 GO:0003723
Vivi3g07809 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 250 IPR000504 GO:0003723
Vivi3g07809 395 CDD RRM3_U2AF65 293 381 - -
Vivi3g07809 395 Gene3D - 54 155 IPR012677 -
Vivi3g07809 395 PANTHER RNA-BINDING PROTEIN 16 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07809 Vivi-Chr3 215079757 215082830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07809 181 374 Eukaryotic Initiation Factors Gene Family AT1G22760 24.490 4.40e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07809 K12837 - gmx:100779915 705.671