Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07802 ATGGGGAGAGGAAAGATTGAGATAAAAAGAATTGAAAATACAACAAATAGGCAAGTGACTTTCTGCAAGAGAAGAAACGGGCTTCTGAAAAAAGCTTATGAATTATCAGTTTTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGAAGACTCTATGAATATTCAAACAATAACATTAGGTCAACAATTGATAGGTACAAGAAAGCATGTTCAGATCATTCAAGCACCACAACTACCACTGAAATTAATGCTCAGTATTATCAGCAAGAATCTGCGAAACTTCGACAACAGATACAGATGCTGCAAAATTCTAACAGGCATTTGATGGGGGATGCTTTAAGCACATTGACTGTGAAAGAGCTTAAGCAGCTAGAGAACAGGCTTGAAAGAGGAATCACTAGGATTAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGTCTTCGGACTAAGCAAATGCAGATAAGTGATGTTGAAAGGCTTCCTCCTCAAGTAAACATGGTTTCTGGACAAGAACTGAATGCAATTCAAGCATTAGCATCTCGTAATTTCTTCAATCCAAATATGATGGAAGATGGAACTTCCTACAATCAATCATCAGATAAGAAGATTCTTCATCTTGGGTGA 684 0.3757 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKQMQISDVERLPPQVNMVSGQELNAIQALASRNFFNPNMMEDGTSYNQSSDKKILHLG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07802 227 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vivi3g07802 227 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g07802 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Vivi3g07802 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vivi3g07802 227 Coils Coil 124 144 - -
Vivi3g07802 227 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g07802 227 Coils Coil 87 107 - -
Vivi3g07802 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi3g07802 227 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vivi3g07802 227 FunFam agamous-like MADS-box protein AGL11 13 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07802 Vivi-Chr3 215040711 215044642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07802 1 227 MADS-box Gene Family AT4G09960 72.532 2.60e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi3g07802 K-box 4.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07802 K09264 - gmx:100301905 398.667