Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07800 ATGGGGAGAGGAAAGATTGAGATAAAAAGAATTGAAAATACAACAAATAGGCAAGTGACTTTCTGCAAGAGAAGAAACGGGCTTCTGAAAAAAGCTTATGAATTATCAGTTTTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGAAGACTCTATGAATATTCAAACAATAACATTAGGTCAACAATTGATAGGTACAAGAAAGCATGTTCAGATCATTCAAGCACCACAACTACCACTGAAATTAATGCTCAGTATTATCAGCAAGAATCTGCGAAACTTCGACAACAGATACAGATGCTGCAAAATTCTAACAGGCATTTGATGGGGGATGCTTTAAGCACATTGACTGTGAAAGAGCTTAAGCAGCTAGAGAACAGGCTTGAAAGAGGAATCACTAGGATTAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGTCTTCGGACTAAGATAAGTGATGTTGAAAGGCTTCCTCCTCAAGTAAACATGGTTTCTGGACAAGAACTGAATGCAATTCAAGCATTAGCATCTCGTAATTTCTTCAATCCAAATATGATGGAAGATGGAACTTCCTACAATCAATCATCAGATAAGAAGATTCTTCATCTTGGGTGA 675 0.3748 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKISDVERLPPQVNMVSGQELNAIQALASRNFFNPNMMEDGTSYNQSSDKKILHLG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07800 224 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vivi3g07800 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Vivi3g07800 224 Coils Coil 124 144 - -
Vivi3g07800 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Vivi3g07800 224 Coils Coil 87 107 - -
Vivi3g07800 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vivi3g07800 224 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g07800 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi3g07800 224 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vivi3g07800 224 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07800 Vivi-Chr3 215040711 215045172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07800 1 224 MADS-box Gene Family AT4G09960 73.478 2.35e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi3g07800 K-box 6.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07800 K09264 - gmx:100301905 404.06