Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07773 ATGCACTCTCACCTCTCATCCTCCCGGGCCAAGGAATCTAAACACTTCATGAAAGCCATACTTCTCTTACCTGTTCATTCCAAACAAATCAGAATTCCAGATGAATTCATATCAAGATTTGGCAATGAACTCAACAATGTTATTACACTTACTGTCCCTGATGGTTGTCAATGGAATATACAACTCAACAAATGCCACAACAATGAAGTTTTCCTTACCAACAAATGGCAAGAGTTCTCACAACACTATTCTCTACATTATGGTTACTACTTAGATTTCAACTATCAAGGAAATTCTAACTTCAATGTTGTTATATATGATACAACTTCTCTTGAAATTTCATATCCAATCACTACTAGTACTACTACTACTAACACTGCTTCCAATGAATACAACCCAAAAAACCCTTCGTTTCGCTCTAAATCCTTCAGCAATCAATATGCGTATATTAGTTCTGATTTTGCTTCAAAATATCTCAAGCTAAATGTTCCTATCAAACTCCAAAACTCTCGAGGAAATCAGTGGCAAGTTTCTTGTAGAAAGCATACAGTCAATTCCTCAGCAATGCGAATATCTGCTGGATTCTGTAAATTTGCAAAGGAAAATAATTTATCAGAAGGAGTTACTTATGTATTTGAGCTGATCAAGAAAGTGCCTGTTCTTGTGCTACTAGTTACACAACTTCACAAGGCTCCCCGTGGAAGGCATGGGCGGTCGGCGAAGGAAAAGCATTTTAAGAAGGCCATACTTCCCTCGCCCCTTCATGAAAAACAAATAAGAATTCCGAACGAATTTGTAACAAGATTTGGGAAAGAACTCGGAGATGTTGCTGAAATATCTGTGCCAGATGGTTCTGTTTGGGAAATGAAACTTGAGAAACGGAACGAAAACATTTTCTTAAGCACCAAATGGCAAGAGTTTGCAGAATACTATTCGATAGAATATGGTTGCTACATGTCATTCAAATATGAAGGAGATTCAAAGTTTAGTGTTGTTATATTTGATGCAACTTCTGTTGAGATATGCTATCCACTCAAAACTTCATGTACTAGTGCTAGGAAAATGTCTGAGGTTGAAACAAGTGAGAATCATGGCAAACATGTCATAAGCATGGCGGCTAAACATGGATTTGAAGGAGCTGAGATTGCCGCCAATGAATTCAACCCAGAAAACCCTTTTTTTCGTACAAAAGTCTATAGAGACAGGTATCCGTATGCTCCTTCTCATTTTGCTAAAAAATATCTGAAGCCAGATGTTCCTATCAAACTCCAAAATGCTGATGGTAAGCAATGGGAAGTTTGTTGTGCATTCAATATTGCAAAATTTCCGGGGGCAATGCGAATACTGAAGGGATATTTTGAATTTCATAGTGATAACAATCTGTCAGAGGGAGATCATTGTGTGTTTGAGCTGATCAAGTTGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGTGCAGTTGACTTTGCCGAGTAA 1476 0.3787 MHSHLSSSRAKESKHFMKAILLLPVHSKQIRIPDEFISRFGNELNNVITLTVPDGCQWNIQLNKCHNNEVFLTNKWQEFSQHYSLHYGYYLDFNYQGNSNFNVVIYDTTSLEISYPITTSTTTTNTASNEYNPKNPSFRSKSFSNQYAYISSDFASKYLKLNVPIKLQNSRGNQWQVSCRKHTVNSSAMRISAGFCKFAKENNLSEGVTYVFELIKKVPVLVLLVTQLHKAPRGRHGRSAKEKHFKKAILPSPLHEKQIRIPNEFVTRFGKELGDVAEISVPDGSVWEMKLEKRNENIFLSTKWQEFAEYYSIEYGCYMSFKYEGDSKFSVVIFDATSVEICYPLKTSCTSARKMSEVETSENHGKHVISMAAKHGFEGAEIAANEFNPENPFFRTKVYRDRYPYAPSHFAKKYLKPDVPIKLQNADGKQWEVCCAFNIAKFPGAMRILKGYFEFHSDNNLSEGDHCVFELIKLKPVVLKVTMFRAVDFAE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07773 491 SUPERFAMILY DNA-binding pseudobarrel domain 14 108 IPR015300 -
Vivi3g07773 491 CDD B3_DNA 149 225 IPR003340 GO:0003677
Vivi3g07773 491 SMART B3_2 138 227 IPR003340 GO:0003677
Vivi3g07773 491 SMART B3_2 245 337 IPR003340 GO:0003677
Vivi3g07773 491 SMART B3_2 393 487 IPR003340 GO:0003677
Vivi3g07773 491 SMART B3_2 16 109 IPR003340 GO:0003677
Vivi3g07773 491 Gene3D - 237 338 IPR015300 -
Vivi3g07773 491 Gene3D - 7 110 IPR015300 -
Vivi3g07773 491 ProSiteProfiles B3 DNA-binding domain profile. 421 487 IPR003340 GO:0003677
Vivi3g07773 491 ProSiteProfiles B3 DNA-binding domain profile. 244 337 IPR003340 GO:0003677
Vivi3g07773 491 Gene3D - 118 230 IPR015300 -
Vivi3g07773 491 Gene3D - 375 490 IPR015300 -
Vivi3g07773 491 SUPERFAMILY DNA-binding pseudobarrel domain 132 223 IPR015300 -
Vivi3g07773 491 SUPERFAMILY DNA-binding pseudobarrel domain 387 485 IPR015300 -
Vivi3g07773 491 PANTHER B3 DOMAIN-CONTAINING 8 217 - -
Vivi3g07773 491 Pfam B3 DNA binding domain 139 217 IPR003340 GO:0003677
Vivi3g07773 491 Pfam B3 DNA binding domain 26 106 IPR003340 GO:0003677
Vivi3g07773 491 Pfam B3 DNA binding domain 405 486 IPR003340 GO:0003677
Vivi3g07773 491 Pfam B3 DNA binding domain 246 336 IPR003340 GO:0003677
Vivi3g07773 491 SUPERFAMILY DNA-binding pseudobarrel domain 241 336 IPR015300 -
Vivi3g07773 491 CDD B3_DNA 407 485 IPR003340 GO:0003677
Vivi3g07773 491 ProSiteProfiles B3 DNA-binding domain profile. 133 228 IPR003340 GO:0003677
Vivi3g07773 491 CDD B3_DNA 14 107 IPR003340 GO:0003677
Vivi3g07773 491 CDD B3_DNA 243 335 IPR003340 GO:0003677
Vivi3g07773 491 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07773 Vivi-Chr3 214836253 214838352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07773 383 491 B3 DNA Binding Superfamily AT3G18990 45.217 3.41e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g07773 B3 4.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07773 - - psat:127128837 758.444