Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi3g07769 | ATGCAGCCTCCCCGGAGAAGAAGGTGTGTCCGTGTCCGGCCATCAGCTCCGGAGAAAGAATCAAAGCATTTTATGAAAGCCATACTTCCCTCACCAATTCATTCCAAACAAGTTAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTCAACAATGTTGCTACTATTACTGTTCCGGATGGTCTTGTTTGGGAAATGGAACTCAAGAAATGCGGCAACAACGAAGTCTACTTTTGCAACAAATGGCAAGAGTTTGCAGAATACTATGGTATAAGATATGGTTGCTACCTGTGTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATACAACTTCTGTTGAGATTTCCTATCCAATCAAACCAGACACAAAGGGTTCTAGTCCTAAGAAAAGATTCATGGTTGAAAAAAGTGAGAATGATGCTAAACAGGTCAAAATCATGTCTAGTTCTGATTCTAAGAGAGAGAATGCTGCCAATGAATTCAACCCAGACAAACCTTATTTTCGTACCAAAATTGCTAAGGGCCAATATGCGTATGTTACTCCTAAATTTGCTAGAAAGTATCTGAAGCCAAATGTTCCTATCAAGCTTCAAAATTCTAATGGAGATCAGTGGGAAGTTTCTTGTGTATTCTATAATGCCTTCGAATCAGCAATGCGAATGGTGAGGGGATTCATTAAATTCAGAAGGGACAACAATCTGTCAGAAGGTGATATTTGTGTGTTTGAGCTGATTAATGAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGCGCGCCTCCCAGGAGAAGAAGGTGTCTCCTGCCATCAGCTCCGAAGAAGGAATCAAACCATTTTATCAAAGCCATACTTCCTTCACCCATTCATTCCAAACAACTTAGAATTCCGGATGAGTTTATATCAAGATTTGGGAATGAACTCAAGGATGTTGCCACGATTAATGTTCCGGATGGCCGTGTTTGGGAAATGGAACTCAAGAAATGCGGCAACCAAGTCTACTTTTCCAACAAATGGCAAGAGTTTGCAGAATACTATTGTATAGGTTATGGTTGTTACTTGTGTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATATTACTTCTGTTGAGATTCCATATCCATTCAAAACAAACACAAAATATTTTAGTCCAAACAAAAGTTTTAAGGTTAAAACAAGTGAGAATCATGGGGAAAATGTCAAAAGCATTTCTAACCCTGCTTCTAAGAGAGCACAGGATGCTGCCAATGAATTCAATCCAATCAACCCTTATTTTCGTACCAAAATCAATACGGGGAAAAATGCGTATGTTAGTGCTGATTTTGCCCGAAAGTATCTAAAGTCAAATGTTCCTATAGAGCTCCAAAATTCTCTTGGAGAGCAGTGGGAAGTTTTTGCTGTAACGCATGATTCCAGATCATTGTCAACAATGCAAATAACTAGAGGATTTCCCAAATTTCAAAGGGACAATAATCTATCAGAGGGAGATATTTGTGTATTTGAGCTGATCAAGTTAAAGCCGAATGTGCTAAAAGTTTCAATGTTTCGCGCAATTGACTATGGTTATTAA | 1599 | 0.379 | MQPPRRRRCVRVRPSAPEKESKHFMKAILPSPIHSKQVRIPDEFITRFGNELNNVATITVPDGLVWEMELKKCGNNEVYFCNKWQEFAEYYGIRYGCYLCFKYEGNSKFSVIIFDTTSVEISYPIKPDTKGSSPKKRFMVEKSENDAKQVKIMSSSDSKRENAANEFNPDKPYFRTKIAKGQYAYVTPKFARKYLKPNVPIKLQNSNGDQWEVSCVFYNAFESAMRMVRGFIKFRRDNNLSEGDICVFELINEKPVVLKVTMFRAPPRRRRCLLPSAPKKESNHFIKAILPSPIHSKQLRIPDEFISRFGNELKDVATINVPDGRVWEMELKKCGNQVYFSNKWQEFAEYYCIGYGCYLCFKYEGNSKFSVIIFDITSVEIPYPFKTNTKYFSPNKSFKVKTSENHGENVKSISNPASKRAQDAANEFNPINPYFRTKINTGKNAYVSADFARKYLKSNVPIELQNSLGEQWEVFAVTHDSRSLSTMQITRGFPKFQRDNNLSEGDICVFELIKLKPNVLKVSMFRAIDYGY | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi3g07769 | 532 | SUPERFAMILY | DNA-binding pseudobarrel domain | 167 | 265 | IPR015300 | - | |
| Vivi3g07769 | 532 | ProSiteProfiles | B3 DNA-binding domain profile. | 201 | 266 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | Gene3D | - | 413 | 531 | IPR015300 | - | |
| Vivi3g07769 | 532 | Gene3D | - | 152 | 266 | IPR015300 | - | |
| Vivi3g07769 | 532 | CDD | B3_DNA | 188 | 264 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | ProSiteProfiles | B3 DNA-binding domain profile. | 462 | 528 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | ProSiteProfiles | B3 DNA-binding domain profile. | 23 | 117 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | Pfam | B3 DNA binding domain | 285 | 375 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | Pfam | B3 DNA binding domain | 24 | 115 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | Pfam | B3 DNA binding domain | 443 | 527 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | Pfam | B3 DNA binding domain | 185 | 265 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | PANTHER | B3 DOMAIN-CONTAINING | 16 | 254 | - | - | |
| Vivi3g07769 | 532 | SMART | B3_2 | 435 | 528 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | SMART | B3_2 | 285 | 377 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | SMART | B3_2 | 24 | 117 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | SMART | B3_2 | 173 | 266 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | CDD | B3_DNA | 284 | 375 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | SUPERFAMILY | DNA-binding pseudobarrel domain | 281 | 376 | IPR015300 | - | |
| Vivi3g07769 | 532 | SUPERFAMILY | DNA-binding pseudobarrel domain | 19 | 116 | IPR015300 | - | |
| Vivi3g07769 | 532 | Gene3D | - | 276 | 378 | IPR015300 | - | |
| Vivi3g07769 | 532 | Gene3D | - | 15 | 118 | IPR015300 | - | |
| Vivi3g07769 | 532 | CDD | B3_DNA | 446 | 526 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | ProSiteProfiles | B3 DNA-binding domain profile. | 284 | 377 | IPR003340 | GO:0003677 | |
| Vivi3g07769 | 532 | SUPERFAMILY | DNA-binding pseudobarrel domain | 430 | 526 | IPR015300 | - | |
| Vivi3g07769 | 532 | CDD | B3_DNA | 22 | 115 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi3g07769 | Vivi-Chr3 | 214829262 | 214833022 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi3g07769 | 411 | 529 | B3 DNA Binding Superfamily | AT3G18990 | 35.200 | 1.11e-13 | 70.9 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | B3 | Vivi3g07769 | B3 | 7.9e-10 | CL0405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi3g07769 | - | - | mtr:11405351 | 580.482 |