Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07752 ATGGCAGATTCCGGGGATGCTGGTTTGGCTATGTGTGAACATCGAGAAACATATGAAGTGGAACCAAATGATGGGTGTAGATTGCTAGAGAGTTATTCCGGGAGAGAATTGGGCATCTCTTGTCATGACCTTTCTATACAGGAACCATATGAAGGCATGGAGTTTATATCCGAAGACGCTGCTAAAATATTCTACGATGAATATGCCCGACATGTAGGATTTGTCATGCGCGTGATGTCTTGTCGACGCTCAGAAAGAGACGGTAGGATTCTTGCCCGCAGGCTTGGGTGTAATAAGGAGGGTCATTGTGTTAGCATACGAGGGAAACTCGGGCCAGTTCGGAAACCAAGGGCCAGCACAAGAGAAGGTTGTAAGGCAATGATTCATATCAAGTTTGATAAGTCCGGAAAATGGGTGATAACAAAGTTTGTGAAAGATCATAATCATCCATTAGTAGTCTCTCCACGCGAAGTGCGCCAAACAATGGACGAGAAGGATAAGAAAATTCAGGAACTAACAACAGAGCTTCGGATGAGAAAACGGTTGTGTGTAACATATCAAGAACAATTAACTTCTTTTATGAAACTTGTTGAAGAACACAATGAGAAGCTGTCTACAAGAATTCGTCAGATACTTGATAATCTTAAAGAATATGAATCCAGAGAAGAGCTTTTGCATCAGACATAG 687 0.4207 MADSGDAGLAMCEHRETYEVEPNDGCRLLESYSGRELGISCHDLSIQEPYEGMEFISEDAAKIFYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKLGPVRKPRASTREGCKAMIHIKFDKSGKWVITKFVKDHNHPLVVSPREVRQTMDEKDKKIQELTTELRMRKRLCVTYQEQLTSFMKLVEEHNEKLSTRIRQILDNLKEYESREELLHQT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07752 228 Pfam FAR1 DNA-binding domain 64 152 IPR004330 -
Vivi3g07752 228 Coils Coil 201 221 - -
Vivi3g07752 228 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 41 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07752 Vivi-Chr3 214625529 214627461 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g07752 FAR1 8.2e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07752 - - gmx:100787741 382.104