Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07748 ATGCTGGTGAAAGAGGTTGAATTTGAAGCTTCGAGAAGCAAGGGTACAATAAATCTCAAAGCCGACGGCAACAATGAATCCGATGATATCTATCTGAAGCTTTTAATCAAGGTATATCGCCTTCTAGTAAGAAAGCTTAGGAGAGAAAGCAAGTTCAATCGTGCTGTACTCGATCAATTGATCATTAGTAAAGACAACCAACTTTCAACAATTTCTTTGACACGGTTGATTGATGCCTTGAAGGACAAGGAGGGCAAAATTGGTGTTGTTGCAGGTGTTGTAACTGATCTTGATTCTATCGTACATGATGTCCCAGCCATTAAAGTTGCAGCAATATCTTTTACAGCAACAGCGCGTGCCCGGATTGAAAGTGCAGGTGGTGAATGCCTTATATTTGACCAACACCCCTTTGCTGATATCTCTGGACATAACTCGGGCCTTGTGATGGAGTCAACAACATCTTGGTGGCCGGACCTCTCCTCTGAGGACTAG 492 0.4309 MLVKEVEFEASRSKGTINLKADGNNESDDIYLKLLIKVYRLLVRKLRRESKFNRAVLDQLIISKDNQLSTISLTRLIDALKDKEGKIGVVAGVVTDLDSIVHDVPAIKVAAISFTATARARIESAGGECLIFDQHPFADISGHNSGLVMESTTSWWPDLSSED 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07748 163 SUPERFAMILY Ribosomal proteins L15p and L18e 28 140 IPR036227 -
Vivi3g07748 163 Pfam Ribosomal protein 60S L18 and 50S L18e 24 148 IPR021131 -
Vivi3g07748 163 Gene3D - 5 155 - -
Vivi3g07748 163 PANTHER 60S RIBOSOMAL PROTEIN L18 24 145 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07748 Vivi-Chr3 214605463 214608187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07748 26 134 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 55.046 1.70e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07748 K02883 - zju:107433132 107.457