Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07747 ATGGTTGCAATAAATCTCAAAGCCGACGGCAACAGTGAATCCGATGATATCTACCTGGAGCTCTTAATCAAGCTATATCGCATTCTAAGGAAGGTTGATAGCAAGTTAAATGAGGCTATACTCCAGCAATTGATCATTAGTAAAGACAACCAACTTTCAACAATTTCTTTGACACGGTTGATCGATGCCTTGAAGGACAAGGAGGGCAAAATTGGTGTTGTTGTAGGTGTTGTAACTGATCTTGATTCTACAGTATATGATGTCCCAGCCATTAAAGTTGCAGCAATATCTTTCACAAACATGGCACGTACCCGGATTGAAAGTGCAGGTGGTGAATGCATTATATTTGAACAACTCTACTCTGGGGATATATTTGGACATAACTCGGTGCTTGTAACGGAGTCAACAACATCTTGGTGGCCGGACCTCTCCTCTGAGGAGGACTAG 447 0.4206 MVAINLKADGNSESDDIYLELLIKLYRILRKVDSKLNEAILQQLIISKDNQLSTISLTRLIDALKDKEGKIGVVVGVVTDLDSTVYDVPAIKVAAISFTNMARTRIESAGGECIIFEQLYSGDIFGHNSVLVTESTTSWWPDLSSEED 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07747 148 Pfam Ribosomal protein 60S L18 and 50S L18e 11 134 IPR021131 -
Vivi3g07747 148 Gene3D - 3 139 - -
Vivi3g07747 148 PANTHER 60S RIBOSOMAL PROTEIN L18 12 133 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vivi3g07747 148 SUPERFAMILY Ribosomal proteins L15p and L18e 16 123 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07747 Vivi-Chr3 214604002 214605168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07747 12 119 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 50.459 3.12e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07747 K02883 - rcu:107260769 111.694