Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07744 ATGAAGAATTGCACCACTGATGAAGCATTAGAGTTACTATCAGCAGCAATTAAACTTGAGTTTCATGATGAGAATAGAGAAAAGTACCAATCTTTTTTCCAAATTTTGAAAGATTACAAAGCTCAAAGAATTGATACAAGGGTTGTTAGATTGAAAGTGCATCAATTGTTGAAAGGCCATAAAGATTTAATTTTGAGGTTCAACACCTCTATGCCATCTCAATATGTAATCAAACTTCCACTAGATGGCGACGATAAACAACCACAATGTGGTCGATTAGAGAAAGAAGATGCATTAGGTTTTCTCAAGGAAGTAGGAGATGTGTTTCAAGGTAAGAATAAGGGAAAGTATGATGAGTTTTTAGAAATTATGAAGGGGTTCAAGGCTCAGAGAATTGAAACAAGTGTTGTTGTGGAGAGAGTGAAGGAGCTGTTTAAAGGGCATATAGCTTTGATTTTGGGGTTTTATAAGTTCTTGCCGGAGGAATACCGTCGATTTGAGGAAGAACATGCATTAGCTTTTGTCAAGAAAGTAGGAGATGTGTTTCAAGATAAGAATAGGGAAAAGTATGATGAGTTTTTAGGAATTTTTAAGGATTTCAAGGCTCAGAGAATTGATGCAAGTGTTGTTGTGAAGAGACTGATGGAGCTGTTTGAAGGGCATACAAATTTAATTTTGGAATTCAATGCCTTCTTGCCAGAGAAATATCGAATCACGCTTCCCCTTCAGGTTCACACTGTTTCATCAGAATTCAATGGGGAGAAAATGAAGGTAGCAGAGAACTGTGAAATTCCTTGGGACCTGCTTGATATCATCTCCCGGAAACTAGATATTGACGAGCTCTTCGGATTCGCTGGCGTGTGCAAGAGTTGGAGGGAATTTCATAAAATTTATTGGAGAAATTTCATGGCATCCGAAGAACCATTACTTCTTCGAAAGTCTTCCTATGATAAAAAATCTTTTTCCTTCATGAGCATACATGATCAAAGAGTTTATCACTCAAAGACAATCGATCATTTCTGGAACTCGGCCTATTCCGGGTCTTCTAGCGGATATTTGATCATGACAACCAACAATAATTCATTTATACTAATGAATCCGTTTACAAGAAAAATGATGGAAATCAACACAACAGCCTTTAAAGTCGAGTTTTCTGTTTTTGCTTACCATGTCTTACTTGCTTTCGGCAAAGGCTCAGAGGAATTTGTCTTAGTGGCTTTATGTACAAGTTCCAACAGTTTACATGTCTATCAATCTCGAAACTCCGATTGGATTACTTACTCGACGAAGGGAAGACCATGGAAGGTTGTCGACTTTGTTGTTTTGCATAATACTATATATGTTGTAACCGACAAGGCGAAGATAGGTGTGCTCAGCTTGAATTCTGCAAATATAAAATTTTTAAAATTGAAGAGTACTCCCAAGGTAACTTCTTCCTCACACCTAAGATTGGTTAGTTGCGACGACGGAAAACTTCTGATGATTCATATTTTGTCTTGGAAAATATGGAATGTGTACGAGATAGACTTGTCAATCAAGAATTTTGTCGAGATGAAAAGTCTAGGCGACATTGCATTATTTTATGCTTCTGGGAAATACTTCTATGCGTTGAGCAACCCGGAAAAATGGGGCTATGAAAGCAATTCTCTGCATGCCATCAATCTTTCATCTACACAATGCAGAGTGTCTATAGGGAAGGATAATGAATTGCCAGAATACATTAGCCATGATAGACTAAGTAAACCTCCTACAGGAAGACCCTATTTGTTGGATTGGTGTTTTAAACATCTTCACTATGAAGTGGATTATTCTCTTGTTGAGTGA 1824 0.3739 MKNCTTDEALELLSAAIKLEFHDENREKYQSFFQILKDYKAQRIDTRVVRLKVHQLLKGHKDLILRFNTSMPSQYVIKLPLDGDDKQPQCGRLEKEDALGFLKEVGDVFQGKNKGKYDEFLEIMKGFKAQRIETSVVVERVKELFKGHIALILGFYKFLPEEYRRFEEEHALAFVKKVGDVFQDKNREKYDEFLGIFKDFKAQRIDASVVVKRLMELFEGHTNLILEFNAFLPEKYRITLPLQVHTVSSEFNGEKMKVAENCEIPWDLLDIISRKLDIDELFGFAGVCKSWREFHKIYWRNFMASEEPLLLRKSSYDKKSFSFMSIHDQRVYHSKTIDHFWNSAYSGSSSGYLIMTTNNNSFILMNPFTRKMMEINTTAFKVEFSVFAYHVLLAFGKGSEEFVLVALCTSSNSLHVYQSRNSDWITYSTKGRPWKVVDFVVLHNTIYVVTDKAKIGVLSLNSANIKFLKLKSTPKVTSSSHLRLVSCDDGKLLMIHILSWKIWNVYEIDLSIKNFVEMKSLGDIALFYASGKYFYALSNPEKWGYESNSLHAINLSSTQCRVSIGKDNELPEYISHDRLSKPPTGRPYLLDWCFKHLHYEVDYSLVE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07744 607 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 336 560 IPR011047 -
Vivi3g07744 607 SUPERFAMILY PAH2 domain 165 233 IPR036600 GO:0006355
Vivi3g07744 607 SUPERFAMILY F-box domain 262 310 IPR036047 GO:0005515
Vivi3g07744 607 ProSiteProfiles PAH domain profile. 164 235 IPR003822 GO:0006355
Vivi3g07744 607 Pfam Paired amphipathic helix repeat 116 159 IPR003822 GO:0006355
Vivi3g07744 607 Pfam Paired amphipathic helix repeat 188 232 IPR003822 GO:0006355
Vivi3g07744 607 Pfam Paired amphipathic helix repeat 27 69 IPR003822 GO:0006355
Vivi3g07744 607 PANTHER SIN3B-RELATED 169 242 IPR039774 GO:0003714
Vivi3g07744 607 FunFam Paired amphipathic helix protein Sin3 97 160 - -
Vivi3g07744 607 Gene3D Paired amphipathic helix 97 160 IPR036600 GO:0006355
Vivi3g07744 607 Gene3D Paired amphipathic helix 170 233 IPR036600 GO:0006355
Vivi3g07744 607 Gene3D Paired amphipathic helix 13 72 IPR036600 GO:0006355
Vivi3g07744 607 SUPERFAMILY PAH2 domain 16 69 IPR036600 GO:0006355
Vivi3g07744 607 ProSiteProfiles PAH domain profile. 91 162 IPR003822 GO:0006355
Vivi3g07744 607 FunFam Paired amphipathic helix protein Sin3 170 233 - -
Vivi3g07744 607 ProSiteProfiles PAH domain profile. 2 74 IPR003822 GO:0006355
Vivi3g07744 607 SUPERFAMILY PAH2 domain 88 161 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07744 Vivi-Chr3 214572000 214574874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07744 1 82 WRKY Transcription Factor Family AT4G12020 43.373 3.06e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g07744 PAH 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07744 - - cam:101488742 693.73