Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07739 ATGTCCGAACAAGAACCACATCCACCATCAAACGACCTATGTTCAATCTGCCACGGAACCTTCCAAATCCCATGTCAAGCAAACTGCTCCCACTGGTTCTGCGCAAACTGTATACTCCTTGTTTGGCGCCACACTTCCGGCATTCAGCCGTGCAAATGTCCGCTCTGTCGTCGACCGATCAACCTCCTGGTTCCGACCAACGAGATTAACAACGAGGATTCACAGCAGATTCTGTCGGAGATTCAGATTTATAACCGGACTTTTGGTCGGCAATCTGATGCTCCTATTGCTCAGAGGATTCTTGATCTTCCGTTTTTGCTGAGGAGGCTGTTTAGGGATTTTGTTAATCCTGATAATTCGCTTCCGGTTGTTATCAAAGCTCGGATTTTTCTTTCGATGATACTGAGTGTCATATACATCGTCAGCCCGATTGACATCATTCCAGAAGGAATATTCGGAGTGATTGGTTTCTTGGATGATGCTCTAGTTGCACTAATCTTCTTCCTACATGCTGCTGCCATTTATAGATCAGTTCTTTACCTCCGTCATGGGGGTGCATAA 561 0.4581 MSEQEPHPPSNDLCSICHGTFQIPCQANCSHWFCANCILLVWRHTSGIQPCKCPLCRRPINLLVPTNEINNEDSQQILSEIQIYNRTFGRQSDAPIAQRILDLPFLLRRLFRDFVNPDNSLPVVIKARIFLSMILSVIYIVSPIDIIPEGIFGVIGFLDDALVALIFFLHAAAIYRSVLYLRHGGA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07739 186 Pfam Protein of unknown function (DUF1232) 132 165 IPR010652 -
Vivi3g07739 186 SMART ring_2 14 56 IPR001841 -
Vivi3g07739 186 CDD RING-HC_RNF113A_B 8 65 - -
Vivi3g07739 186 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
Vivi3g07739 186 SUPERFAMILY RING/U-box 9 67 - -
Vivi3g07739 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 96 IPR013083 -
Vivi3g07739 186 Pfam Zinc finger, C3HC4 type (RING finger) 14 56 IPR018957 GO:0046872
Vivi3g07739 186 PANTHER UNCHARACTERIZED 4 183 IPR038896 GO:0061630
Vivi3g07739 186 ProSiteProfiles Zinc finger RING-type profile. 14 57 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07739 Vivi-Chr3 214527459 214529617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07739 39 186 C3H Transcription Factor Family AT1G72175 57.237 1.47e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07739 K15707 - thj:104800136 249.595