Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07738 ATGTCTACTTCTCATTTCCACAAAACAAAGCATAAGATTCATATCATCACCGACAGCAACAACAAAAAAAACATCACACACAGAGAAACAAAAATGTCCGAACAAGAACCACATCCACCGTCAAACGACCTATGTTCAATCTGCCACGGAACCTTCCAAATCCCATGTCAAGCAAACTGCTCCCACTGGTTCTGCGCAAACTGTATACTCCTTGTTTGGCGCCACACTTCCGGCATTCAGCCGTGCAAATGTCCGCTCTGTCGTCGACCGATCAACCTCCTGGTTCCGACGAATGGCATAAACAACGAGGATTCGCAGCAGATTCTGTCGGAGATTCAGATTTATAACCGGACTTTTGGTCGGCAATCTGATGCTCCTATTGCTCAGAGGATTCTTGATCTTCCGTTTCTGCTGAGGAGGCTGTTTAGGGATTTTGTTAATCCTGATAACTCGCTTCCGGTTGTTATCAAAGCTCGGATTTTTCTTTCGATGATACTGAGTGTCATATACATCGTCAGCCCGATTGACATCATTCCAGAAGGAATATTCGGAGTGATTGGTTTCTTGGATGATGCTCTAGTTGCACTAATCTTCTTCCTACATGCTGCTGCCATTTATAGATCAGTTCTTTACCTCCGTCATGGGGGTGCATAA 654 0.4465 MSTSHFHKTKHKIHIITDSNNKKNITHRETKMSEQEPHPPSNDLCSICHGTFQIPCQANCSHWFCANCILLVWRHTSGIQPCKCPLCRRPINLLVPTNGINNEDSQQILSEIQIYNRTFGRQSDAPIAQRILDLPFLLRRLFRDFVNPDNSLPVVIKARIFLSMILSVIYIVSPIDIIPEGIFGVIGFLDDALVALIFFLHAAAIYRSVLYLRHGGA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07738 217 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Vivi3g07738 217 PANTHER UNCHARACTERIZED 14 214 IPR038896 GO:0061630
Vivi3g07738 217 SUPERFAMILY RING/U-box 34 98 - -
Vivi3g07738 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 126 IPR013083 -
Vivi3g07738 217 Pfam Zinc finger, C3HC4 type (RING finger) 45 87 IPR018957 GO:0046872
Vivi3g07738 217 CDD RING-HC_RNF113A_B 39 96 - -
Vivi3g07738 217 SMART ring_2 45 87 IPR001841 -
Vivi3g07738 217 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Vivi3g07738 217 MobiDBLite consensus disorder prediction 1 39 - -
Vivi3g07738 217 Pfam Protein of unknown function (DUF1232) 163 196 IPR010652 -
Vivi3g07738 217 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07738 Vivi-Chr3 214463523 214465760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07738 70 217 C3H Transcription Factor Family AT1G72175 57.237 7.27e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07738 K15707 - thj:104800136 250.366