Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07719 ATGCCATCTCAATATGTAATCAAACTTCCACTAGATGGCGGCGGTAAACAACCACAATGTGGTCGATTAGAGAAAGAAGATGCATTAGGTTTTCTCAAGGAAGTAGGAGATGTGTTTCAAGGTAAGAATAAGGGAAAGTATGATGAGTTTTTAGAAATTATGAAGGGTTTCAAGGCTCAGAGAATTGAAAGAAGTGTTGTTGTGGAGAGAGTGAAGGAGCTGTTTAAAGGGCATATAGCTTTGATTTTGGGGTTTTATAAGTTCTTGCCGGAGGAATACCGTCGATTAGAGGAAGAACATGCATTAGCTTTTGTCAAGAAAGTAGAAGATGTGTTTCAAGGTAAGAATAGGGAAAAGTATGATGAGTTTTTAGAAATTTTTAAGGATTTCAAGGCTCGGAGAATTGATGCAAGTGTTGTTGTGAAGAGATTGAAGGAGCTGTGTAAAGGGCATGCAAATTTAATTTTGGAATTCAACGCCCTCTTGCCAAAGAATTACTTTTTATGCTGTTTTTTTTGCTATAATATGCCATAA 534 0.367 MPSQYVIKLPLDGGGKQPQCGRLEKEDALGFLKEVGDVFQGKNKGKYDEFLEIMKGFKAQRIERSVVVERVKELFKGHIALILGFYKFLPEEYRRLEEEHALAFVKKVEDVFQGKNREKYDEFLEIFKDFKARRIDASVVVKRLKELCKGHANLILEFNALLPKNYFLCCFFCYNMP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07719 177 PANTHER SIN3B-RELATED 24 116 IPR039774 GO:0003714
Vivi3g07719 177 Gene3D Paired amphipathic helix 27 90 IPR036600 GO:0006355
Vivi3g07719 177 Gene3D Paired amphipathic helix 100 163 IPR036600 GO:0006355
Vivi3g07719 177 SUPERFAMILY PAH2 domain 95 164 IPR036600 GO:0006355
Vivi3g07719 177 ProSiteProfiles PAH domain profile. 94 165 IPR003822 GO:0006355
Vivi3g07719 177 FunFam Paired amphipathic helix protein Sin3 100 163 - -
Vivi3g07719 177 ProSiteProfiles PAH domain profile. 21 92 IPR003822 GO:0006355
Vivi3g07719 177 FunFam Paired amphipathic helix protein Sin3 27 90 - -
Vivi3g07719 177 Pfam Paired amphipathic helix repeat 46 89 IPR003822 GO:0006355
Vivi3g07719 177 Pfam Paired amphipathic helix repeat 118 160 IPR003822 GO:0006355
Vivi3g07719 177 SUPERFAMILY PAH2 domain 18 91 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07719 Vivi-Chr3 214192477 214193065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07719 101 166 WRKY Transcription Factor Family AT4G12020 48.485 9.40e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g07719 PAH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07719 K11644 - vvo:131659904 362.844