Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07702 ATGTCGATGTTACTAAGGAAACTGTTTGAGATCATGTTGAGACGAAATCCAACAACATGTTCAGATGAAAATTCAAAACAATTGTTGGAGCGTGGTGATTTCAATTTGGGTGAATTGGATCAACTACCTAGTGATATTTTGGTACAAATTTTGAGGCTTTTGGGTCCCAAAGAGGTTGCAAAACTGAGTGTGATTTGCAAGTCTTTGAGGTTTTTTGTGTCTGATAATCGCTTGTGGCTTCACTTCCTTCAGACTCATCAATCTGATCCTTCTTGGGATTCTGTTTTCTTTGCTGAAACTAATTTGACTTCTGGTTACCCTATTCCATCCTTTGTTGGTCAGAGGCCTCAGTTGTCATTCAAACATATCTATGGCCAAAGAGCAAAAGTTCCCGGTGCTATTATCATCGACGGCGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCTTGTCCGTCAGGCCGATCCGCAACATTTTTGGAATTCGGCAACATTGAGTCACCAATGTATACTAGACTTCGACATTTTTTCGCAACTATTTATAACAGGATGCAAGTGAAACCGAATAATCAACCGGTTATTGTTACTATACCGATATGCCATTATGAAGATTCTGAATCAGCCAGAGCATCGAGACGACAACTTAAAGAAGCGATTTATGCTTCCCTGTTCGACTTGAATGTTCCTTCTGTTTGTGCTGTCAACCAGGCGACTCTAGCTTTATATGCTGCGAAACGAACTTCTGGAATAGTGGTTAATATAGGTTTTCAAGTCACATCGATAGTTCCAATTTTTAATGGTAAAGTAATGCGCAAGATCGGTGTGGAAGTTATGGGATTCGGAGCGCTGAAAGTTACGGGATTTCTTAAGGAAAAGATGCAATTGAATAACTTAAACTTTCAATCTTTGTACACTGTTCGCGCTTTGAAAGAGAATCTATGCTACGTTGCTCTTGATTACGAAGCGGAGCTATTGAAGAAAAACACACAAGCATCATTTCAAGCTGCGGGAGATGGATTGTTTACACTTTCGAAAGAGCGGTTTCAGGCAGCCGAGGTTTTATTCAAGCCGCATCTTGCTGGAATGCAATCGATGGGTTTGCACCAGGTCGTAGCGCTTTGTATGTTGCATTGCCATTCCGCAGAGCTACCGGGCGAAAGTGATTGGTACAAAACTGTCGTTTTATCGGGAGGAACTGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATAGCTTTCTTCCTCCACACGCATCCAATGGAATTAGAGTCGTACCTCCTCCATACGGCGTCGATACTCCATGGTTCGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCCGGTCCTTGGTGTGTGGAAAAATCGAAGTTCCGCCAGAAGCCTAGGCTCAGTCTCATATGGTGA 1419 0.4242 MSMLLRKLFEIMLRRNPTTCSDENSKQLLERGDFNLGELDQLPSDILVQILRLLGPKEVAKLSVICKSLRFFVSDNRLWLHFLQTHQSDPSWDSVFFAETNLTSGYPIPSFVGQRPQLSFKHIYGQRAKVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNNQPVIVTIPICHYEDSESARASRRQLKEAIYASLFDLNVPSVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPIFNGKVMRKIGVEVMGFGALKVTGFLKEKMQLNNLNFQSLYTVRALKENLCYVALDYEAELLKKNTQASFQAAGDGLFTLSKERFQAAEVLFKPHLAGMQSMGLHQVVALCMLHCHSAELPGESDWYKTVVLSGGTACLPGLAERLEKELHSFLPPHASNGIRVVPPPYGVDTPWFGAKMIGNLSTFPGPWCVEKSKFRQKPRLSLIW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07702 472 SMART actin_3 131 462 IPR004000 -
Vivi3g07702 472 SUPERFAMILY Actin-like ATPase domain 247 456 IPR043129 -
Vivi3g07702 472 SUPERFAMILY Actin-like ATPase domain 132 253 IPR043129 -
Vivi3g07702 472 Pfam F-box domain 39 80 IPR001810 GO:0005515
Vivi3g07702 472 PANTHER ACTIN 174 460 IPR004000 -
Vivi3g07702 472 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Vivi3g07702 472 Pfam Actin 180 456 IPR004000 -
Vivi3g07702 472 CDD NBD_sugar-kinase_HSP70_actin 134 279 - -
Vivi3g07702 472 SUPERFAMILY F-box domain 38 95 IPR036047 GO:0005515
Vivi3g07702 472 Gene3D Actin; Chain A, domain 4 281 365 - -
Vivi3g07702 472 Gene3D - 178 462 - -
Vivi3g07702 472 Gene3D - 28 106 - -
Vivi3g07702 472 Gene3D - 238 437 - -
Vivi3g07702 472 SMART fbox_2 42 82 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07702 Vivi-Chr3 213914029 213918637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07702 180 468 Cytoskeleton Gene Families AT3G12110 31.757 2.11e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07702 K16616 - gmx:100791973 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g07702 3 213914029 213918637 Vivi3g07702 3 213914029 213918637 ECH