Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07688 ATGACAACTTTTCAAAATCAGAACCAAAATCAAAATCAAAATGAGTGTGAAACTGAACCCAAAACCCTAAACACAAACCCTTATCCTCCTCCAACTGCTCTCTACTCTGACCTTGTTCGTGATGCTAATCTTTTTAGGGAAAAGCTTCAATCTTTTCATGATTCTTTTGGTACCAAATTAAAAATTCCTACTATAGGAGGGAAGCCACTAGATCTTCATCACCTTTTTATCGAAGTAACATCTCGCGGAGGTGTGGAAAAGGTAATTGTAGATCGTAAATGGAAGGAAGTAATTATGACCTTCAACTTCCGAGATACCATAACAAGCGCATCATTCATGGTGCGCAGGTACTATCTATCATTGCTTTATCACTTTGAGCAAGCGTATTATTTGGGCAAACAATCCCCTCCCTCACCACCTAGTGCTCTGAGTGGGAGCCTTGCCAATAGCTCCTCAACCAACAAGGAGGGTGCTGCTACCAATTATTCGCCTCGTCAGGTTATTCCAGCACAGACAATTGGTTCTTCATTGCATGGAACAATTGACGAGAAATTCGACGGTGGATATATAGTTACGGTGGACCTAGGTTCTCAACAGCTGAAAGGTGTCCTGTATCATGTTTCAAGTAATGTATCTCAGAGTTCATACACTAAAGGTTTATCAGGAGAAAGAGTTGAGAGGTAA 684 0.4094 MTTFQNQNQNQNQNECETEPKTLNTNPYPPPTALYSDLVRDANLFREKLQSFHDSFGTKLKIPTIGGKPLDLHHLFIEVTSRGGVEKVIVDRKWKEVIMTFNFRDTITSASFMVRRYYLSLLYHFEQAYYLGKQSPPSPPSALSGSLANSSSTNKEGAATNYSPRQVIPAQTIGSSLHGTIDEKFDGGYIVTVDLGSQQLKGVLYHVSSNVSQSSYTKGLSGERVER 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07688 227 ProSiteProfiles ARID domain profile. 39 130 IPR001606 GO:0003677
Vivi3g07688 227 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g07688 227 CDD ARID_HMGB9-like 41 126 IPR045303 GO:0003677
Vivi3g07688 227 SMART ARID_2 36 126 - -
Vivi3g07688 227 Gene3D - 33 144 IPR036431 GO:0003677
Vivi3g07688 227 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 214 - -
Vivi3g07688 227 SMART bright_3 40 131 IPR001606 GO:0003677
Vivi3g07688 227 MobiDBLite consensus disorder prediction 140 164 - -
Vivi3g07688 227 Pfam ARID/BRIGHT DNA binding domain 44 126 IPR001606 GO:0003677
Vivi3g07688 227 SUPERFAMILY ARID-like 39 138 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07688 Vivi-Chr3 213803512 213805811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07688 33 217 ARID Transcription Factor Family AT3G13350 52.941 8.62e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi3g07688 ARID 4.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07688 - - mtr:11414168 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g07688 3 213803512 213805811 Vivi3g07688 3 213803512 213805811 ECH