Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07660 ATGGAAATCTTTGGAAAAACATTCTATATACTCTTACTATTTTCTTCTATTTTCTCCATAGTCTCATCAAGAAAAGAATCTTCCTCAAACAACATAGATTGGTGGTGTAACAAAACACCACATCCTAAACCATGCAAATACTACACAACTAAAATGAACAATCATTTCAAAATCAAACATAGAGTTGAGTTTAGAAGAATGCTTGTTCAACAAGCTTTAGAACAATCTCTTTTCATGCAAAAAGAATCAAAACAAAACTCATCGGGGGAGCATAAAATTGTTCATGGTGATTGTTTGAAGCTATTCGAAAACACAATCTTTCATCTCAATCGTACACTTGAAGGATTACACAAGGGAAACAAAATATGTTCACCAAGTGATGCACAAACATGGCTCACAACTTCTCTCACAAACATTGAAACATGTAAAAATGGAGCTTTAGAACTCAATGCGCAAGATTTCAATTTCATAGTTCATAACAATGTCATTGAGATGATAAGGAACACCTTAGCCATCAATATGTATTTCTTGAAACACAACAAAGAAACCGGAGAAGGGTCATTTCCAAGTTGGTTTTCAAAGCATGAGCGGAAGCTTTTGCAATCTAAATCTTCACTAAAGTTTAATATTGTGGTGGCAAAAGATGGTTCGGGACAGTTTAAGACAGTGCAAGCTGCTTTGGATAATGCTGCTAAGAGAAAATATAAAGCAAGATTTGTGATACATGTGAAGAAAGGTGTTTATAAAGAAAATATTGAGGTTAATGTTCATAATGATAACATTATGTTGGTTGGTGATGGAATGCAAAATACCATAATAACAAGTTTTAGAAGTGTTCAAGGAGGTTATACTACTTGTAGCTCAGCAACAGCGGGTATTGATGGACTTCACTTCATTGCGCGTGATATAACCTTCCAAAATACAGCTGGTCCACACAAGGGTCAAGCAGTGGCGTTACGATCAGCCTCAGATTTGTCTGTCTTCTATCGATGTGCCATATCAGGATATCAAGATACTCTCATGACTCATGCACAACGTCAATTTTATCGACAATGCTACATCTATGGCACCGTAGACTTCATCTTTGGCAATGCCGCTGTGGTATTCCAAAATTGTAACATTTTCGCAAGAAAGCCATTGGATGGTCAAGCTAACATGATCACAGCCCAAGGTAGAGGCGATCCATTCCAAAACACCGGAATTTCATTCCACAATTGTCAAATTAAGGCAACTTCGGATCTAAAGCCCGTTGTCGACAAGTACAAAACCTATTTGGGTCGGCCTTGGCAACAATACTCAAGAGTTATGGTGATGAAAACTTTTATGGACACTTTAGTGAGCCCGTTGGGTTGGTCTCCATGGGGTGACACTGATTTCGCTCAAGGTACATTGTATTATGCAGAATACGAAAATTACGGGCCAGGCTCATCAACAAAAGACAGAGTGAAATGGCCTGGTTATCATGTGATTACAAGTCCAAACGAAGCATCAAAGTTTACTGTAACCGGGCTTCTCGCAGGCCCGTCATGGTTGTCTACTACTACTGTGCCATTCACATCTGGTCTTTGA 1569 0.3837 MEIFGKTFYILLLFSSIFSIVSSRKESSSNNIDWWCNKTPHPKPCKYYTTKMNNHFKIKHRVEFRRMLVQQALEQSLFMQKESKQNSSGEHKIVHGDCLKLFENTIFHLNRTLEGLHKGNKICSPSDAQTWLTTSLTNIETCKNGALELNAQDFNFIVHNNVIEMIRNTLAINMYFLKHNKETGEGSFPSWFSKHERKLLQSKSSLKFNIVVAKDGSGQFKTVQAALDNAAKRKYKARFVIHVKKGVYKENIEVNVHNDNIMLVGDGMQNTIITSFRSVQGGYTTCSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIKATSDLKPVVDKYKTYLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQGTLYYAEYENYGPGSSTKDRVKWPGYHVITSPNEASKFTVTGLLAGPSWLSTTTVPFTSGL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07660 522 NCBIfam pectinesterase inhibitor domain 9 173 IPR006501 GO:0004857
Vivi3g07660 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 176 IPR035513 -
Vivi3g07660 522 SMART PMEI_2 27 172 IPR006501 GO:0004857
Vivi3g07660 522 Pfam Plant invertase/pectin methylesterase inhibitor 31 172 IPR006501 GO:0004857
Vivi3g07660 522 SUPERFAMILY Pectin lyase-like 207 521 IPR011050 -
Vivi3g07660 522 CDD PMEI-like_3 34 178 - -
Vivi3g07660 522 Pfam Pectinesterase 209 507 IPR000070 GO:0030599|GO:0042545
Vivi3g07660 522 Gene3D - 203 522 IPR012334 -
Vivi3g07660 522 PANTHER PECTINESTERASE 17 512 - -
Vivi3g07660 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 173 IPR035513 -
Vivi3g07660 522 FunFam Pectinesterase 203 522 - -
Vivi3g07660 522 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07660 Vivi-Chr3 213251766 213261448 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07660 26 522 Carbohydrate Esterase AT5G51500 57.031 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07660 K01051 - gmx:100806133 777.704