LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g07648	ATGGAACTGAAGGCAAATCATACGTCTCTCCTCGCTGAAACCGCAACCTTGACAAGGACAAGGTCAAGGCTCGGCACGCCTTCGAGTCTCTCTTGCTCTCCTACAGGTGGTTCGACTTTTCTCCACGGTCCCTCGCTAACTATTCCAAGGAAGAAGAATGGAGTTCTTGACGATGTTCGTTATAACGGTTGTCTCGACGCAATGAGATCGTCTTCTCCTACTCACAAGAAAATATCTATGGATGTTGGTCACGGTGTTCCGTCTTCTGAAGCCGATGCCGCTTATTTAACCTGGCTGCTAGAGTTTCCATCAGCACTTTCGTCTTTTGAGCAAATTACTAACTGTGCAAAAGGCAAGAAAGTAGCATTGTTTCTCGATTATGACGGGACTCTTTCGCCGATTGTTGACAATCCCGACCGCGCTTTCATGTCTGACAAGATGCGCGACGCAGTTAAAAGCGTGGCAGAGTATTTTCCGACCGCGATAATTAGCGGAAGAAGTCGTGAAAAGGTACATGAGTTCGTTGGCTTGACCGAACTTCATTACGCTGGTAGTCATGGAATGGACATTATCGGTCCTCTTAGAGAATCGGTATCTGATGATCACCCGAATTGTATTAGATCTACCGATAAGAAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCCGATTTCCTGCCTATGATTGACGAGGTACGGATGTTGCTCGTTGATTGTATAAGAGACATCAAAGGCGCAAAAATTGAGAATAATAAGTTTTGTGTCTCTGTACATTACCGTAATGTAGACGAAGAGAATTGGGATTTGGTGGCACAACGCGTTTACGATATCATGAAAGACTATCCACATTTACGATTAACTCACGGTCGAAAGGTTTTAGAGGTTCGACCGGTGATTGACTGGGATAAGGGAAAAGCTGTTACCTTTTTGCTAGAGTCTCTCGGACTTAACGATGATGAAGATGTTCTAGCTATATATATCGGTGATGATCGAACAGACGAAGATGCATTTAAGGTTTTGAGTGAGGTTAATAAAGGTTTCGGAATCTTAGTTTCTTCTGCGCCTAAAGAAAGCAACGCTGTTTACTCTCTTTGTGATCCTTCCGAGGTGATGGAATTTCTCAAGTCACTTGTGGCATGGAAATCAAACTCTTTACTATAG	1161	0.4367	MELKANHTSLLAETATLTRTRSRLGTPSSLSCSPTGGSTFLHGPSLTIPRKKNGVLDDVRYNGCLDAMRSSSPTHKKISMDVGHGVPSSEADAAYLTWLLEFPSALSSFEQITNCAKGKKVALFLDYDGTLSPIVDNPDRAFMSDKMRDAVKSVAEYFPTAIISGRSREKVHEFVGLTELHYAGSHGMDIIGPLRESVSDDHPNCIRSTDKKGKEVNLFQPAADFLPMIDEVRMLLVDCIRDIKGAKIENNKFCVSVHYRNVDEENWDLVAQRVYDIMKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDDEDVLAIYIGDDRTDEDAFKVLSEVNKGFGILVSSAPKESNAVYSLCDPSEVMEFLKSLVAWKSNSLL	386

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g07648	386	MobiDBLite	consensus disorder prediction	14	36	-	-
	Vivi3g07648	386	CDD	HAD_TPP	122	372	-	-
	Vivi3g07648	386	Gene3D	-	121	216	IPR023214	-
	Vivi3g07648	386	Gene3D	-	223	385	IPR023214	-
	Vivi3g07648	386	NCBIfam	HAD-IIB family hydrolase	123	340	IPR006379	-
	Vivi3g07648	386	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	39	384	IPR044651	GO:0004805\|GO:0005992
	Vivi3g07648	386	Pfam	Trehalose-phosphatase	124	367	IPR003337	GO:0003824\|GO:0005992
	Vivi3g07648	386	FunFam	Trehalose 6-phosphate phosphatase	228	386	-	-
	Vivi3g07648	386	NCBIfam	trehalose-phosphatase	118	378	IPR003337	GO:0003824\|GO:0005992
	Vivi3g07648	386	SUPERFAMILY	HAD-like	122	380	IPR036412	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g07648	Vivi-Chr3	213166105	213169999	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g07648	119	384	Trehalose Biosynthesis Gene Families	AT1G23870	26.667	1.16e-10	61.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g07648	K01087		-	gmx:100819495	565.459

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