Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07648 ATGGAACTGAAGGCAAATCATACGTCTCTCCTCGCTGAAACCGCAACCTTGACAAGGACAAGGTCAAGGCTCGGCACGCCTTCGAGTCTCTCTTGCTCTCCTACAGGTGGTTCGACTTTTCTCCACGGTCCCTCGCTAACTATTCCAAGGAAGAAGAATGGAGTTCTTGACGATGTTCGTTATAACGGTTGTCTCGACGCAATGAGATCGTCTTCTCCTACTCACAAGAAAATATCTATGGATGTTGGTCACGGTGTTCCGTCTTCTGAAGCCGATGCCGCTTATTTAACCTGGCTGCTAGAGTTTCCATCAGCACTTTCGTCTTTTGAGCAAATTACTAACTGTGCAAAAGGCAAGAAAGTAGCATTGTTTCTCGATTATGACGGGACTCTTTCGCCGATTGTTGACAATCCCGACCGCGCTTTCATGTCTGACAAGATGCGCGACGCAGTTAAAAGCGTGGCAGAGTATTTTCCGACCGCGATAATTAGCGGAAGAAGTCGTGAAAAGGTACATGAGTTCGTTGGCTTGACCGAACTTCATTACGCTGGTAGTCATGGAATGGACATTATCGGTCCTCTTAGAGAATCGGTATCTGATGATCACCCGAATTGTATTAGATCTACCGATAAGAAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCCGATTTCCTGCCTATGATTGACGAGGTACGGATGTTGCTCGTTGATTGTATAAGAGACATCAAAGGCGCAAAAATTGAGAATAATAAGTTTTGTGTCTCTGTACATTACCGTAATGTAGACGAAGAGAATTGGGATTTGGTGGCACAACGCGTTTACGATATCATGAAAGACTATCCACATTTACGATTAACTCACGGTCGAAAGGTTTTAGAGGTTCGACCGGTGATTGACTGGGATAAGGGAAAAGCTGTTACCTTTTTGCTAGAGTCTCTCGGACTTAACGATGATGAAGATGTTCTAGCTATATATATCGGTGATGATCGAACAGACGAAGATGCATTTAAGGTTTTGAGTGAGGTTAATAAAGGTTTCGGAATCTTAGTTTCTTCTGCGCCTAAAGAAAGCAACGCTGTTTACTCTCTTTGTGATCCTTCCGAGGTGATGGAATTTCTCAAGTCACTTGTGGCATGGAAATCAAACTCTTTACTATAG 1161 0.4367 MELKANHTSLLAETATLTRTRSRLGTPSSLSCSPTGGSTFLHGPSLTIPRKKNGVLDDVRYNGCLDAMRSSSPTHKKISMDVGHGVPSSEADAAYLTWLLEFPSALSSFEQITNCAKGKKVALFLDYDGTLSPIVDNPDRAFMSDKMRDAVKSVAEYFPTAIISGRSREKVHEFVGLTELHYAGSHGMDIIGPLRESVSDDHPNCIRSTDKKGKEVNLFQPAADFLPMIDEVRMLLVDCIRDIKGAKIENNKFCVSVHYRNVDEENWDLVAQRVYDIMKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDDEDVLAIYIGDDRTDEDAFKVLSEVNKGFGILVSSAPKESNAVYSLCDPSEVMEFLKSLVAWKSNSLL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07648 386 MobiDBLite consensus disorder prediction 14 36 - -
Vivi3g07648 386 CDD HAD_TPP 122 372 - -
Vivi3g07648 386 Gene3D - 121 216 IPR023214 -
Vivi3g07648 386 Gene3D - 223 385 IPR023214 -
Vivi3g07648 386 NCBIfam HAD-IIB family hydrolase 123 340 IPR006379 -
Vivi3g07648 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 39 384 IPR044651 GO:0004805|GO:0005992
Vivi3g07648 386 Pfam Trehalose-phosphatase 124 367 IPR003337 GO:0003824|GO:0005992
Vivi3g07648 386 FunFam Trehalose 6-phosphate phosphatase 228 386 - -
Vivi3g07648 386 NCBIfam trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Vivi3g07648 386 SUPERFAMILY HAD-like 122 380 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07648 Vivi-Chr3 213166105 213169999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07648 119 384 Trehalose Biosynthesis Gene Families AT1G23870 26.667 1.16e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g07648 K01087 - gmx:100819495 565.459