Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g07644 ATGGAGAATAATAGTAGAGTGTGTCTTGTTTGTAACAAGTCTTTTTCTAATGGGAAAGCTTTAGGAGGCCACATGAAGTCTCACTTAGCCAGGTCGTCAATCACTAGAAAACCTCCCATTAACATCCAAGTGTCTCAATACTCATCTGAGTCAAAAAGACATCCAACTAAATCGATCTCTGTATCTTCTTCATCAACTCACAATTCTAGAAACAACCCTATACATAATCTTCGATCTCAGAAAAGGAACTACTATTATACCCTAGCAAACTTTGGTAGGTATAATGCATTTAAGTTTTATCCAAAATACCCAACTCGAAAAAGATCAAAGCGCAATCGTAGGAAAAAATGTGTGTCTGAAGAAAAAGATGAGAATTCAAAATTTAGTGTGGCTGAAGAAAAAGAAGAGAATTCGCTCATTAATGTGGCTGAAGAAAAAGAAGAGAATACACAATTTAAATTAGTGTATAATGATTTTGATATAGAAGCTGCAGAAACATTAGTCATTATTTGTATGAAAGAATGGCAACAAATTGAGAAGAAAAACTTTGAAGAGAAGGTAAAAATTTATGAAAATTAA 579 0.3299 MENNSRVCLVCNKSFSNGKALGGHMKSHLARSSITRKPPINIQVSQYSSESKRHPTKSISVSSSSTHNSRNNPIHNLRSQKRNYYYTLANFGRYNAFKFYPKYPTRKRSKRNRRKKCVSEEKDENSKFSVAEEKEENSLINVAEEKEENTQFKLVYNDFDIEAAETLVIICMKEWQQIEKKNFEEKVKIYEN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g07644 192 MobiDBLite consensus disorder prediction 116 130 - -
Vivi3g07644 192 MobiDBLite consensus disorder prediction 45 77 - -
Vivi3g07644 192 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vivi3g07644 192 Pfam C2H2-type zinc finger 7 30 - -
Vivi3g07644 192 MobiDBLite consensus disorder prediction 107 130 - -
Vivi3g07644 192 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 154 IPR044303 GO:0006355
Vivi3g07644 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g07644 Vivi-Chr3 213110381 213110959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g07644 5 28 C2H2 Transcription Factor Family AT5G61470 70.833 6.19e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g07644 zf-C2H2_6 1.1e-08 CL0361